Gene detail information of Glyur000111s00011080.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30050.1 | 6.00E-152 | transducin family protein / WD-40 repeat family protein |
| NR | XP_006586103.1 | 0 | PREDICTED: protein SEC13 homolog isoform X2 [Glycine max] |
| COG | YP_001864889.1 | 2.00E-22 | hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|O64740|SC13B_ARATH | 0 | Protein transport protein SEC13 homolog B {ECO:0000305} |
| trEMBL | tr|K7LA80|K7LA80_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G43390.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00111 | 310894 | 314493 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000111s00011080.1 | PF00400.27 | WD40 | 84 | 115 | 1.40E-05 |
| Glyur000111s00011080.1 | PF00400.27 | WD40 | 125 | 163 | 6.70E-10 |
| Glyur000111s00011080.1 | PF00400.27 | WD40 | 173 | 209 | 5.90E-08 |
| Glyur000111s00011080.1 | PF00400.27 | WD40 | 221 | 269 | 3.80E-08 |
| Glyur000111s00011080.1 | PF00400.27 | WD40 | 280 | 318 | 3.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 59.740 |
| SRR1783600 | control | 60.100 |
| SRR1783602 | moderate drought stress | 43.618 |
| SRR1811619 | moderate drought stress | 43.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 56.136 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.978 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 60.817 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 59.665 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.488 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 65.198 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.939 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 112.312 |
| SRR2868004 | Drought Stress(Tissue:root) | 83.094 |
| SRR2967015 | Control (Tissue:root) | 81.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 45.852 |
| SRR9715740 | Leave | 42.246 |
| SRR9715741 | Leave | 39.002 |
| SRR9715739 | Root | 97.818 |
| SRR9715742 | Root | 53.124 |
| SRR9715743 | Root | 59.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 61.660 |
| SRR8749028 | MeJA induced 9h | 63.870 |
| SRR8749029 | MeJA induced 9h | 41.573 |
| SRR8749030 | Uninduced | 32.271 |
| SRR8749031 | Uninduced | 18.654 |
| SRR8749032 | Uninduced | 22.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 78.795 |
| SRR8400027 | Control-Root | 75.316 |