Gene detail information of Glyur000111s00011085.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26810.27.00E-46SWIB/MDM2 domain superfamily protein
NRAFK40800.11.34E-63unknown [Medicago truncatula]
COGYP_008515740.11.00E-10SWIB/MDM2 domain-containing protein [Variovorax paradoxus B4]
trEMBLtr|I3SKK8|I3SKK8_MEDTR5.00E-64Uncharacterized protein {ECO:0000313|EMBL:AFK40800.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00111328926331915+


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000111s00011085.1PF02201.13SWIB22951.40E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.985
SRR1783600control27.313
SRR1783602moderate drought stress18.797
SRR1811619moderate drought stress18.861

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.003
DRR006520Root Summer glycyrrhizin high producing strain14.887
DRR006521Root Winter glycyrrhizin high producing strain10.633
DRR006522Root Winter glycyrrhizin high producing strain10.814
DRR006523Root Summer glycyrrhizin low producing strain18.470
DRR006524Root Summer glycyrrhizin low producing strain19.383
DRR006525Leaf Summer glycyrrhizin high producing strain11.983
DRR006526Leaf Summer glycyrrhizin high producing strain11.143

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.912
SRR2868004Drought Stress(Tissue:root)11.811
SRR2967015Control (Tissue:root)8.636

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.263
SRR9715740Leave12.006
SRR9715741Leave8.650
SRR9715739Root4.546
SRR9715742Root9.008
SRR9715743Root7.852

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.299
SRR8749028MeJA induced 9h22.085
SRR8749029MeJA induced 9h34.641
SRR8749030Uninduced46.472
SRR8749031Uninduced36.200
SRR8749032Uninduced13.345

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.153
SRR8400027Control-Root8.458

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved