Gene detail information of Glyur000112s00012324.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G01440.10DEAD/DEAH box RNA helicase family protein
NRXP_004498301.10PREDICTED: ATP-dependent DNA helicase RecG-like isoform X1 [Cicer arietinum]
COGYP_007110031.12.00E-136ATP-dependent DNA helicase RecG [Geitlerinema sp. PCC 7407]
Swissprottr|Q9LUW5|RH53_ARATH9.00E-08DEAD-box ATP-dependent RNA helicase 53
trEMBLtr|G7I947|G7I947_MEDTR0ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:AES59867.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00112149677159846+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03655recG EC:3.6.4.12 Homologous recombination map03440


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000112s00012324.1PF00270.24DEAD5707381.50E-15
Glyur000112s00012324.1PF00271.26Helicase_C7978706.70E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.769
SRR1783600control3.886
SRR1783602moderate drought stress4.368
SRR1811619moderate drought stress4.411

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.610
DRR006520Root Summer glycyrrhizin high producing strain6.673
DRR006521Root Winter glycyrrhizin high producing strain5.189
DRR006522Root Winter glycyrrhizin high producing strain5.045
DRR006523Root Summer glycyrrhizin low producing strain7.321
DRR006524Root Summer glycyrrhizin low producing strain7.232
DRR006525Leaf Summer glycyrrhizin high producing strain6.401
DRR006526Leaf Summer glycyrrhizin high producing strain6.467

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.275
SRR2868004Drought Stress(Tissue:root)11.098
SRR2967015Control (Tissue:root)11.583

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.938
SRR9715740Leave6.448
SRR9715741Leave4.484
SRR9715739Root0.507
SRR9715742Root4.470
SRR9715743Root3.293

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.816
SRR8749028MeJA induced 9h14.395
SRR8749029MeJA induced 9h7.238
SRR8749030Uninduced7.483
SRR8749031Uninduced3.649
SRR8749032Uninduced3.999

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.627
SRR8400027Control-Root8.752

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved