Gene detail information of Glyur000113s00009420.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G19950.14.00E-75RING/U-box superfamily protein
NRXP_003592721.14.10E-142RING finger protein [Medicago truncatula]
Swissprottr|P0CH30|RING1_GOSHI4.00E-104E3 ubiquitin-protein ligase RING1
trEMBLtr|G7IE87|G7IE87_MEDTR2.00E-142E3 ubiquitin-protein ligase RING1-like protein {ECO:0000313|EMBL:AES62972.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001133266933640-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000113s00009420.1PF14369.1zf-RING_314452.30E-09
Glyur000113s00009420.1PF13639.1zf-RING_22042479.70E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control56.081
SRR1783600control58.369
SRR1783602moderate drought stress61.335
SRR1811619moderate drought stress63.995

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain50.557
DRR006520Root Summer glycyrrhizin high producing strain49.813
DRR006521Root Winter glycyrrhizin high producing strain47.245
DRR006522Root Winter glycyrrhizin high producing strain45.874
DRR006523Root Summer glycyrrhizin low producing strain45.367
DRR006524Root Summer glycyrrhizin low producing strain43.282
DRR006525Leaf Summer glycyrrhizin high producing strain23.228
DRR006526Leaf Summer glycyrrhizin high producing strain23.415

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.083
SRR2868004Drought Stress(Tissue:root)23.427
SRR2967015Control (Tissue:root)21.054

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.892
SRR9715740Leave25.998
SRR9715741Leave22.241
SRR9715739Root44.294
SRR9715742Root24.989
SRR9715743Root30.312

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.712
SRR8749028MeJA induced 9h28.692
SRR8749029MeJA induced 9h27.911
SRR8749030Uninduced12.403
SRR8749031Uninduced10.048
SRR8749032Uninduced15.176

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.522
SRR8400027Control-Root21.552

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved