Gene detail information of Glyur000113s00009423.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19910.1 | 3.00E-46 | RING/U-box superfamily protein |
| NR | XP_003555846.1 | 7.59E-179 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like isoform 2 [Glycine max] |
| Swissprot | tr|Q9LT17|BBR_ARATH | 7.00E-97 | E3 ubiquitin ligase BIG BROTHER-related |
| trEMBL | tr|I1NF64|I1NF64_SOYBN | 5.00E-179 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G23790.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00113 | 44572 | 49000 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000113s00009423.1 | PF13639.1 | zf-RING_2 | 290 | 332 | 6.00E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 54.100 |
| SRR1783600 | control | 52.439 |
| SRR1783602 | moderate drought stress | 94.907 |
| SRR1811619 | moderate drought stress | 94.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 113.815 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 113.715 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 135.809 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 132.394 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 114.612 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 115.148 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 49.706 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 49.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 94.317 |
| SRR2868004 | Drought Stress(Tissue:root) | 103.759 |
| SRR2967015 | Control (Tissue:root) | 109.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 49.346 |
| SRR9715740 | Leave | 42.676 |
| SRR9715741 | Leave | 58.053 |
| SRR9715739 | Root | 88.707 |
| SRR9715742 | Root | 66.344 |
| SRR9715743 | Root | 70.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 88.620 |
| SRR8749028 | MeJA induced 9h | 87.151 |
| SRR8749029 | MeJA induced 9h | 82.398 |
| SRR8749030 | Uninduced | 88.497 |
| SRR8749031 | Uninduced | 71.808 |
| SRR8749032 | Uninduced | 98.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 84.606 |
| SRR8400027 | Control-Root | 75.127 |