Gene detail information of Glyur000113s00009438.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G40820.10Ataxia telangiectasia-mutated and RAD3-related
NRKHN37378.10Serine/threonine-protein kinase ATR [Glycine soja]
Swissprottr|Q9FKS4|ATR_ARATH0Serine/threonine-protein kinase ATR
trEMBLtr|K7LLZ3|K7LLZ3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G43040.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00113135967148427+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06640ATR EC:2.7.11.1 Fanconi anemia pathway map03460
Cell cyclemap04110
Apoptosis - flymap04214
p53 signaling pathwaymap04115
HTLV-I infectionmap05166


Gene Ontology

molecular_function

GO:0004674  protein serine/threonine kinase activity

GO:0005488  binding

GO:0005515  protein binding

GO:0016772  transferase activity, transferring phosphorus-containing groups

GO:0016773  phosphotransferase activity, alcohol group as acceptor



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000113s00009438.1PF08064.8UME110712111.80E-24
Glyur000113s00009438.1PF02259.18FAT181121891.80E-51
Glyur000113s00009438.1PF00454.22PI3_PI4_kinase241526623.70E-47
Glyur000113s00009438.1PF02260.15FATC270127327.90E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.875
SRR1783600control1.888
SRR1783602moderate drought stress1.592
SRR1811619moderate drought stress1.586

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.092
DRR006520Root Summer glycyrrhizin high producing strain1.082
DRR006521Root Winter glycyrrhizin high producing strain0.717
DRR006522Root Winter glycyrrhizin high producing strain0.688
DRR006523Root Summer glycyrrhizin low producing strain1.610
DRR006524Root Summer glycyrrhizin low producing strain1.559
DRR006525Leaf Summer glycyrrhizin high producing strain0.969
DRR006526Leaf Summer glycyrrhizin high producing strain1.008

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.034
SRR2868004Drought Stress(Tissue:root)1.494
SRR2967015Control (Tissue:root)1.851

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.256
SRR9715740Leave1.735
SRR9715741Leave0.916
SRR9715739Root0.177
SRR9715742Root1.845
SRR9715743Root1.526

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.269
SRR8749028MeJA induced 9h2.387
SRR8749029MeJA induced 9h1.669
SRR8749030Uninduced0.568
SRR8749031Uninduced0.322
SRR8749032Uninduced1.936

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.773
SRR8400027Control-Root2.613

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved