Gene detail information of Glyur000113s00009440.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35140.19.00E-164Transducin/WD40 repeat-like superfamily protein
NRKEH44400.10transducin/WD-like repeat-protein [Medicago truncatula]
COGYP_007163236.11.00E-12WD-40 repeat-containing protein [Cyanobacterium aponinum PCC 10605]
Swissprottr|Q3Y8L7|DAW1_CHLRE7.00E-08Dynein assembly factor with WDR repeat domains 1
trEMBLtr|A0A072W2E3|A0A072W2E3_MEDTR0Transducin/WD-like repeat-protein {ECO:0000313|EMBL:KEH44400.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00113161332165362+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000113s00009440.1PF00400.27WD40991331.00E-05
Glyur000113s00009440.1PF00400.27WD403784150.096
Glyur000113s00009440.1PF00400.27WD404204560.0033


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.363
SRR1783600control43.153
SRR1783602moderate drought stress49.196
SRR1811619moderate drought stress50.361

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain55.232
DRR006520Root Summer glycyrrhizin high producing strain54.718
DRR006521Root Winter glycyrrhizin high producing strain75.631
DRR006522Root Winter glycyrrhizin high producing strain73.158
DRR006523Root Summer glycyrrhizin low producing strain40.271
DRR006524Root Summer glycyrrhizin low producing strain39.516
DRR006525Leaf Summer glycyrrhizin high producing strain31.951
DRR006526Leaf Summer glycyrrhizin high producing strain32.110

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.655
SRR2868004Drought Stress(Tissue:root)58.273
SRR2967015Control (Tissue:root)58.316

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.374
SRR9715740Leave23.373
SRR9715741Leave28.977
SRR9715739Root47.032
SRR9715742Root45.815
SRR9715743Root47.723

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.543
SRR8749028MeJA induced 9h44.224
SRR8749029MeJA induced 9h35.735
SRR8749030Uninduced31.612
SRR8749031Uninduced22.871
SRR8749032Uninduced23.580

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root68.183
SRR8400027Control-Root64.210

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved