Gene detail information of Glyur000113s00009468.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16920.1 | 0 | ubiquitin-conjugating enzyme 23 |
| NR | XP_004497182.1 | 0 | PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9ZVX1|UBC23_ARATH | 0 | Probable ubiquitin-conjugating enzyme E2 23 |
| trEMBL | tr|I1NF93|I1NF93_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G24150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00113 | 327486 | 335252 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10581 | UBE2O | EC:2.3.2.24 | Ubiquitin mediated proteolysis | map04120 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000113s00009468.1 | PF00179.21 | UQ_con | 896 | 1039 | 2.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.585 |
| SRR1783600 | control | 12.630 |
| SRR1783602 | moderate drought stress | 12.834 |
| SRR1811619 | moderate drought stress | 12.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.092 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.004 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.661 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.427 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.319 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.278 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.432 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.143 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.413 |
| SRR2967015 | Control (Tissue:root) | 27.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.009 |
| SRR9715740 | Leave | 20.164 |
| SRR9715741 | Leave | 20.191 |
| SRR9715739 | Root | 2.010 |
| SRR9715742 | Root | 16.839 |
| SRR9715743 | Root | 14.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.174 |
| SRR8749028 | MeJA induced 9h | 20.133 |
| SRR8749029 | MeJA induced 9h | 13.998 |
| SRR8749030 | Uninduced | 10.403 |
| SRR8749031 | Uninduced | 17.478 |
| SRR8749032 | Uninduced | 11.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.905 |
| SRR8400027 | Control-Root | 21.485 |