Gene detail information of Glyur000114s00010453.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G45300.10beta-amylase 2
NRXP_004512346.10PREDICTED: beta-amylase 8-like [Cicer arietinum]
COGYP_004639880.12.00E-35beta/alpha-amylase [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q9FH80|BAM8_ARATH0Beta-amylase 8
trEMBLtr|V7CIY1|V7CIY1_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW30089.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001141426020290-


Gene family

Gene familysubfamily
Transcription Factors FamilyBES1
Carbohydrate-Active enzymes FamilyGH14


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0000272  polysaccharide catabolic process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0016161  beta-amylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000114s00010453.1PF05687.8DUF822522014.40E-45
Glyur000114s00010453.1PF01373.12Glyco_hydro_142426202.20E-82


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.557
SRR1783600control23.464
SRR1783602moderate drought stress32.972
SRR1811619moderate drought stress32.514

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.859
DRR006520Root Summer glycyrrhizin high producing strain37.499
DRR006521Root Winter glycyrrhizin high producing strain12.594
DRR006522Root Winter glycyrrhizin high producing strain12.462
DRR006523Root Summer glycyrrhizin low producing strain42.630
DRR006524Root Summer glycyrrhizin low producing strain42.686
DRR006525Leaf Summer glycyrrhizin high producing strain20.026
DRR006526Leaf Summer glycyrrhizin high producing strain20.002

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.596
SRR2868004Drought Stress(Tissue:root)47.481
SRR2967015Control (Tissue:root)51.371

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.398
SRR9715740Leave34.136
SRR9715741Leave31.748
SRR9715739Root12.965
SRR9715742Root24.253
SRR9715743Root21.765

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.874
SRR8749028MeJA induced 9h32.906
SRR8749029MeJA induced 9h25.864
SRR8749030Uninduced16.020
SRR8749031Uninduced10.304
SRR8749032Uninduced14.676

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.812
SRR8400027Control-Root28.594

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved