Gene detail information of Glyur000114s00010454.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G45290.12.00E-82RING/U-box superfamily protein
NRXP_004512348.10PREDICTED: uncharacterized protein LOC101497151 isoform X2 [Cicer arietinum]
Swissprottr|Q69U49|RMR2_ORYSJ1.00E-14Receptor homology region, transmembrane domain- and RING domain-containing protein 2 (Precursor)
trEMBLtr|G7K5F2|G7K5F2_MEDTR0Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES95502.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001142185626941-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000114s00010454.1PF13639.1zf-RING_26536966.40E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.253
SRR1783600control4.219
SRR1783602moderate drought stress2.245
SRR1811619moderate drought stress2.391

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.229
DRR006520Root Summer glycyrrhizin high producing strain4.196
DRR006521Root Winter glycyrrhizin high producing strain0.203
DRR006522Root Winter glycyrrhizin high producing strain0.198
DRR006523Root Summer glycyrrhizin low producing strain2.048
DRR006524Root Summer glycyrrhizin low producing strain2.061
DRR006525Leaf Summer glycyrrhizin high producing strain2.473
DRR006526Leaf Summer glycyrrhizin high producing strain2.509

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.975
SRR2868004Drought Stress(Tissue:root)5.042
SRR2967015Control (Tissue:root)6.352

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.820
SRR9715740Leave1.253
SRR9715741Leave0.946
SRR9715739Root1.823
SRR9715742Root3.018
SRR9715743Root2.424

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.355
SRR8749028MeJA induced 9h1.932
SRR8749029MeJA induced 9h0.999
SRR8749030Uninduced0.174
SRR8749031Uninduced0.000
SRR8749032Uninduced0.075

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.371
SRR8400027Control-Root12.103

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved