Gene detail information of Glyur000114s00010457.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G31500.13.00E-129DNAse I-like superfamily protein
NRXP_004512352.10PREDICTED: carbon catabolite repressor protein 4 homolog 4-like [Cicer arietinum]
COGYP_005369360.14.00E-12hypothetical protein COCOR_03385 [Corallococcus coralloides DSM 2259]
Swissprottr|A8MS41|CCR4D_ARATH3.00E-153Carbon catabolite repressor protein 4 homolog 4
trEMBLtr|G7K5F4|G7K5F4_MEDTR0Carbon catabolite repressor-like protein {ECO:0000313|EMBL:AES95504.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001145858463044+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12603CNOT6, CCR4 EC:3.1.13.4 RNA degradation map03018


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000114s00010457.1PF03372.18Exo_endo_phos543921.40E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.007
SRR1783600control6.891
SRR1783602moderate drought stress10.225
SRR1811619moderate drought stress10.102

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.675
DRR006520Root Summer glycyrrhizin high producing strain9.731
DRR006521Root Winter glycyrrhizin high producing strain11.765
DRR006522Root Winter glycyrrhizin high producing strain11.360
DRR006523Root Summer glycyrrhizin low producing strain6.236
DRR006524Root Summer glycyrrhizin low producing strain6.364
DRR006525Leaf Summer glycyrrhizin high producing strain14.932
DRR006526Leaf Summer glycyrrhizin high producing strain14.755

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.864
SRR2868004Drought Stress(Tissue:root)12.180
SRR2967015Control (Tissue:root)11.336

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.387
SRR9715740Leave13.344
SRR9715741Leave12.634
SRR9715739Root1.568
SRR9715742Root4.516
SRR9715743Root4.636

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.673
SRR8749028MeJA induced 9h13.167
SRR8749029MeJA induced 9h11.864
SRR8749030Uninduced20.835
SRR8749031Uninduced16.220
SRR8749032Uninduced13.307

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.784
SRR8400027Control-Root13.574

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved