Gene detail

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Gene detail information of Glyur000114s00010488.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004512338.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum]
COG	YP_004775215.1	3.00E-49	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7KI99\|G7KI99_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:AES75308.1}

Sequence

Transcript Sequence

>Glyur000114s00010488.1
TTGTTCCTAAGCCAAATGAAGCCTTTTTCTTTCTCGTTAGTATACCTTCATTTGCTTATTCTCTTTACTTTGAAGTTAATGTGGTTTAGCCTAAATAGAACTGTGGCCTTGTCATTGGGAAACCAAACCGATCATTTGGCACTGCTCCAATTTAAGGAATCAATATCCAGTGACTCGTATGGAATCCTAGATTCTTGGAATAGTTCAACGCCCTTCTGCAACTGGCATGGAATCACATGCAACTCCATGCATCAAAGAGTTACGGAGTTGAACCTAAGTGGGTATAAGTTGCATGGATCCATATCTACCCATGTTGGCAATCTCTCTTTACTGAGAAACCTCAACCTTGCAAACAATAGCTTCTTTGGAGAAATCCCACATGAACTGGGTCGGTTGTTACAATTGCAGCTACTCCGTCTCACCAATAACTCGCTTACAGGTGAAATTCCTACAAACCTCACAAATTGCTCCAATCTTAGAGGCTTATACTTGGAAGGGAACATTTTGATTGGAAAAATACCAATTGAATTATGCTCTCTTCAAAAGCTTCAAAAGTTTGGCATTTTAAAAAACAAGTTAACCGGAGGAGTCCCACCATTCATAGGGAATCTTTCATCCTTAACAGGTCTATCGGTTGGTTATAACAACTTAGAGGGAAATATTCCACAAGAAATATGCCGCCTCAAAAACTTGACAGAGTTGTATGTGTCTAACAACAAATTATCTGGAAATTTTCCCTCTTGTCTTTATAATATGTCATCTCTTACTTTAATCTCAGCTCCATTGAATCACTTTAATGGCTCTCTTCAACCCAACATGTTCCATACCCTCCCCAATCTCCAATTTTTTAGCATTGGCATAAATCAATTCTTTGGTCCAATCCCCACTTCTGTTGCAAATGCTTCTAGCTTAACATATTTTGATATCAGTCAAAACCATTTTGTCGGACAAGTTCCAAATCTAGGAAAGCTACAACATCTCAGGAAGCTAAATTTGCAATTCAACAATCTAGGTGACAATTCAACTGAGGATTTGGAGTTTTTAAGATCAATGGCAAACTGTAGTAAGTTGAAAGGGTTTTCTATAGCCTATAATAATTTTGGGGTTAGTTTGCCAAAGTCCATAGGCAACTTATCCACCCAACTTAGTGAACTATATCTTGGTGGTAATCAAATATCGGGAAAAATTCCTACAGAATTAGGAAATCTAATTGGCTTATCTCTCTTAGCCATGGAGCTTAACCACTTTGAAGGAATTATTCCAGCTACTTTTGGGAAGTTTCAAAAGATGCATAAGTTAGAATTGAGTGGAAACAGGCTGTCAGGAGATATACCAACCTTCATAGGCAACTTCAGTCAATTGTTTTACTTGAATTTAGGACAAAATAAGTTAGAAAGGAATATTCCTCCAAGTATAGGAAACTGCCAAAAGTTACAATTCCTAAACCTTTCACAGAACAATCTTAGAGGAACCATACCCTTAGAGGTTTTTACTCTTTCATCTTTGACAAACTTATTGGACTTGTCAGAAAATTCTTTTAGTGGTAGCTTACCAAAAGAAGTGGGTACGCTAAAAAACATCGATTGGCTAGATGTCTCTCAAAATCATCTATCCGGTGACATTCCTGGAACTATTGGGGAATGCATAAGCTTAGAATACTTTCATTTACAAGGGAACTCCTTCCACGGAAACATACCTTCCTCTTTGGCTTCTCTTAAAGGTCTTCGATATTTAGACTTGTCAAGAAATCAGTTGTCTGGACCAATTCCTGTTGCTCTACAGAACATTTCTGTTTTAGAACACTTAAATGTTTCTTTTAACATGTTGGAAGGCGAGGTACCAACAAGAGGTGTTTTTGGAAATGCAAGCCAGTTAGCAGTGACCGGAAACAATAAGCTTTGTGGAGGAATTTCAAAGTTGCATCTTCCGCCATGCCCTGTCAAAGGTATGAAACAAACAAAACACCATAATTTCAGGTTGATAGCAGTGATAGTTAGTGTGGTTGCTTTTCTTCTTATACTGTCATCTATTCTAACTATCTACTGGGTGAGGAAAAGAAACAAGAAACAGACTTTTGATTCACCAACAATTGACCAACTAGATAAGGTTTCATACCAAGACCTACATCAGGGAACCGATGGGTTCTCGGCTACAAACTTGATTGGATCAGGAAGCTTTGGCTCTGTGTACAAAGGAAATCTTGTGGCAGAGGATAAATTTGTTGCCGTAAAGGTCCTAAACCTTCAAAAAAAGGGAGCTCACAAGAGTTTCATTGTAGAATGCAATGCACTCAAAAATATTAGACATCGAAATCTTGTTAAGATTTTAACCTGTTGTTCCAGTACTGATTACAAAGGTCAAGAATTTAAAGCTCTTCTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGCTACATCCAAGGACAGGAAGTGTGGAAGAGCTTCCTAAAGCATTGGACCTTGATCAAAGGCTAAATATCGTTATCGATGTTGCTTCTGCGCTACATTATCTACATAATGAATGTGAGCAATTGGTCCTTCATTGTGATCTAAAGCCAAGCAATGTTCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGTATTGCAAAACTTGTCTCATCCACTGACAGTACCTCTCCGAAGGAAACTAGTGGTAGTACAATTGGAATAAAAGGGACTGTTGGCTATGCTCCTCCAGAGTATGGGATGGGTTCTCAAGTGTCCACATATGGTGACATGTATAGCTTCGGGATGCTCATGTTGGAAATGCTTACTGGAAGAAGACCCACAGATGAAATGTTTGAAGATGGTCAAAATCTGCATAACTTTGTTGAAATTTCATTTTCTGATAATCTTATACAGATTTTGGACCCTCATCTTGTACCAAGAGATGCAGAAGCAACAATAGAAGATGGAATCAGTGGGATTCTCATTCCAAGTGTACAGAAGTGCTTAGCTTCACTTTTTAGGATTGGACTCGCTTGTTCATTGGAATCACCGAAAGAAAGAATGAATATAGTGGATGTCACTAGAGAGTTAAACATAATCAGAAAGACATTTCTTATTGGTGAGATAAATTGA

Protein Sequence

>Glyur000114s00010488.1
LFLSQMKPFSFSLVYLHLLILFTLKLMWFSLNRTVALSLGNQTDHLALLQFKESISSDSYGILDSWNSSTPFCNWHGITCNSMHQRVTELNLSGYKLHGSISTHVGNLSLLRNLNLANNSFFGEIPHELGRLLQLQLLRLTNNSLTGEIPTNLTNCSNLRGLYLEGNILIGKIPIELCSLQKLQKFGILKNKLTGGVPPFIGNLSSLTGLSVGYNNLEGNIPQEICRLKNLTELYVSNNKLSGNFPSCLYNMSSLTLISAPLNHFNGSLQPNMFHTLPNLQFFSIGINQFFGPIPTSVANASSLTYFDISQNHFVGQVPNLGKLQHLRKLNLQFNNLGDNSTEDLEFLRSMANCSKLKGFSIAYNNFGVSLPKSIGNLSTQLSELYLGGNQISGKIPTELGNLIGLSLLAMELNHFEGIIPATFGKFQKMHKLELSGNRLSGDIPTFIGNFSQLFYLNLGQNKLERNIPPSIGNCQKLQFLNLSQNNLRGTIPLEVFTLSSLTNLLDLSENSFSGSLPKEVGTLKNIDWLDVSQNHLSGDIPGTIGECISLEYFHLQGNSFHGNIPSSLASLKGLRYLDLSRNQLSGPIPVALQNISVLEHLNVSFNMLEGEVPTRGVFGNASQLAVTGNNKLCGGISKLHLPPCPVKGMKQTKHHNFRLIAVIVSVVAFLLILSSILTIYWVRKRNKKQTFDSPTIDQLDKVSYQDLHQGTDGFSATNLIGSGSFGSVYKGNLVAEDKFVAVKVLNLQKKGAHKSFIVECNALKNIRHRNLVKILTCCSSTDYKGQEFKALLFEYMKNGSLEQWLHPRTGSVEELPKALDLDQRLNIVIDVASALHYLHNECEQLVLHCDLKPSNVLLDDDMVAHVSDFGIAKLVSSTDSTSPKETSGSTIGIKGTVGYAPPEYGMGSQVSTYGDMYSFGMLMLEMLTGRRPTDEMFEDGQNLHNFVEISFSDNLIQILDPHLVPRDAEATIEDGISGILIPSVQKCLASLFRIGLACSLESPKERMNIVDVTRELNIIRKTFLIGEIN

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00114	227882	231076	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000114s00010488.1	PF08263.7	LRRNT_2	42	81	7.00E-12
Glyur000114s00010488.1	PF00560.28	LRR_1	134	156	1.1
Glyur000114s00010488.1	PF13516.1	LRR_6	228	249	0.11
Glyur000114s00010488.1	PF13516.1	LRR_6	324	345	0.1
Glyur000114s00010488.1	PF00560.28	LRR_1	381	403	0.28
Glyur000114s00010488.1	PF13855.1	LRR_8	431	488	6.60E-07
Glyur000114s00010488.1	PF13855.1	LRR_8	550	609	9.90E-08
Glyur000114s00010488.1	PF00069.20	Pkinase	718	946	7.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.035
DRR006520	Root Summer glycyrrhizin high producing strain	0.034
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.203
DRR006524	Root Summer glycyrrhizin low producing strain	0.215
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.029
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.030

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.345
SRR2868004	Drought Stress(Tissue:root)	0.388
SRR2967015	Control (Tissue:root)	0.686

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.447
SRR9715740	Leave	1.221
SRR9715741	Leave	2.485
SRR9715739	Root	0.000
SRR9715742	Root	0.018
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.023
SRR8749028	MeJA induced 9h	0.044
SRR8749029	MeJA induced 9h	0.016
SRR8749030	Uninduced	0.115
SRR8749031	Uninduced	0.016
SRR8749032	Uninduced	0.004

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.261
SRR8400027	Control-Root	0.189