Gene detail information of Glyur000115s00008222.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55110.1 | 2.00E-88 | indeterminate(ID)-domain 7 |
| NR | AES67848.2 | 0 | C2H2-type zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q8H1F5|IDD7_ARATH | 1.00E-127 | Protein indeterminate-domain 7 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|G7IUH6|G7IUH6_MEDTR | 0 | C2H2-type zinc finger protein {ECO:0000313|EMBL:AES67848.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00115 | 38943 | 41916 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 55.852 |
| SRR1783600 | control | 55.572 |
| SRR1783602 | moderate drought stress | 76.753 |
| SRR1811619 | moderate drought stress | 76.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.338 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.195 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.570 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.191 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.724 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.785 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.265 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.703 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.458 |
| SRR2967015 | Control (Tissue:root) | 28.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.357 |
| SRR9715740 | Leave | 17.103 |
| SRR9715741 | Leave | 15.235 |
| SRR9715739 | Root | 12.400 |
| SRR9715742 | Root | 19.209 |
| SRR9715743 | Root | 18.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.686 |
| SRR8749028 | MeJA induced 9h | 3.667 |
| SRR8749029 | MeJA induced 9h | 2.039 |
| SRR8749030 | Uninduced | 1.021 |
| SRR8749031 | Uninduced | 0.855 |
| SRR8749032 | Uninduced | 0.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.744 |
| SRR8400027 | Control-Root | 22.221 |