Gene detail

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Gene detail information of Glyur000115s00008239.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13890.2	1.00E-65	myb domain protein 26
NR	KHN30062.1	1.10E-141	Transcription factor MYB86 [Glycine soja]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	2.00E-67	Transcription factor MYB86
trEMBL	tr\|K7M3M1\|K7M3M1_SOYBN	7.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G42431.1}

Sequence

Transcript Sequence

>Glyur000115s00008239.1
ATGGGGCATCACTCATGCTGCAACAAGCAGAAGGTCAAAAGAGGGCTATGGTCACCTGAAGAAGATGAAAAGCTCATCAACTACATCACAACTTATGGCCATGGTTGCTGGAGCTCTGTCCCTAAACTTGCAGGGCTGCAGAGGTGTGGGAAGAGTTGCAGGTTAAGATGGATTAACTATCTGAGACCTGATTTGAAAAGGGGAAGCTTCTCTGCACAGGAAGCAGCTCTCATTATTGAACTTCATAGTATTCTGGGCAACAGGTGGGCTCAGATAGCGAAGCACCTACCGGGGAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAGCTCCTTTCTCATCATGATGTTGTTCCTTCTTTACCCACATTTTCTGATCATCATATTATTCCTCGCAATGGCAATTCAGTGGAAAGTTTCTTCCCTTTAAATGACCACATTAGCCCTATCCTAAACCCCCATCAATATCACCACCAGCTATACCAGCTTCCCATTCCATCCTCAATCCTACTGCAAGGGAATAATATTGATCATCATCATCAAAATGATATCAAGATAGATATCAACAATTATAATGCCAATTTCATACATGTCCAGAATCCAATGCCAGAAACAGTAGTAGTACCACCATCCAATATTATTCCATCTTCTACTACTTATGAGGATACATGGTCATTGAACTGTGTACCTATTCATCTCAATAATCATCCAAATCAAGAAAACCAAATTGCCAAAACTGATGATACTGATACCACCCCACATTATAACAACATTGTTGAGAATTTCATCAATATGCCTAATACATGGCAGCAGCAATGTGACAGTCACTTGGTGGAAATGGAGCCTATTGTGCCAAAAGTATGCAGTGATCAGAGCATAATCAAGGATTATGTTTGTAGCATCCCATATTCTTCTTCTTCTTCTTCTGCTTCTGCTTCACAAGAACATCTTGCAAGAATTGATCAGTGCTATACACAAGAAGATCAAATTGTGGCAGCAGCTCAACAAGTGGAGTGGATTGATGCCCTCATGTCATCCTTGCCATCCTCAATTACAACATCTTCATCATCAGTATCATTCTATCAAGCAGCAGACAAAATAGTCACAAAACCTATCCTAGCTTCTTCAAGTGATCATTGGGAGTCATAAGCATGGGTACCCGTACTATATTAGTAGATATCATATATAGGTTAATTTTTTGTGTATGTATATAGTTGAGTAGTGGGGGAATCTTTATATGTGATGAGCTCAATTAATTCCATGCATTTTAAGGGTAAAAAAAAGAAGCNTGCATTTAATTATCTATTGAATTTTTCGAATAAGTGGGGTGAGTAGATGTTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00115	118235	119945	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000115s00008239.1	PF00249.26	Myb_DNA-binding	14	61	2.10E-15
Glyur000115s00008239.1	PF00249.26	Myb_DNA-binding	67	109	1.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.426
SRR1783600	control	1.439
SRR1783602	moderate drought stress	1.208
SRR1811619	moderate drought stress	1.090

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.609
DRR006520	Root Summer glycyrrhizin high producing strain	6.370
DRR006521	Root Winter glycyrrhizin high producing strain	0.081
DRR006522	Root Winter glycyrrhizin high producing strain	0.079
DRR006523	Root Summer glycyrrhizin low producing strain	1.221
DRR006524	Root Summer glycyrrhizin low producing strain	1.222
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.616
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.682

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.143
SRR2868004	Drought Stress(Tissue:root)	1.056
SRR2967015	Control (Tissue:root)	1.096

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.719
SRR9715740	Leave	1.070
SRR9715741	Leave	0.007
SRR9715739	Root	0.081
SRR9715742	Root	0.222
SRR9715743	Root	0.070

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.003
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.640
SRR8400027	Control-Root	6.495