Gene detail information of Glyur000115s00008249.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G72740.26.00E-28Homeodomain-like/winged-helix DNA-binding family protein
NRXP_007135518.12.81E-117hypothetical protein PHAVU_010G136100g [Phaseolus vulgaris]
Swissprottr|F4I7L1|TRB4_ARATH4.00E-68Telomere repeat-binding factor 4
trEMBLtr|V7APC8|V7APC8_PHAVU1.00E-117Uncharacterized protein {ECO:0000313|EMBL:ESW07512.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00115187572190846-


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006334  nucleosome assembly


cellular_component

GO:0000786  nucleosome

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003682  chromatin binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000115s00008249.1PF00249.26Myb_DNA-binding5562.50E-10
Glyur000115s00008249.1PF00538.14Linker_histone1321951.50E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.935
SRR1783600control24.605
SRR1783602moderate drought stress23.988
SRR1811619moderate drought stress24.194

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.237
DRR006520Root Summer glycyrrhizin high producing strain25.604
DRR006521Root Winter glycyrrhizin high producing strain17.055
DRR006522Root Winter glycyrrhizin high producing strain16.916
DRR006523Root Summer glycyrrhizin low producing strain35.855
DRR006524Root Summer glycyrrhizin low producing strain34.997
DRR006525Leaf Summer glycyrrhizin high producing strain10.697
DRR006526Leaf Summer glycyrrhizin high producing strain10.755

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.839
SRR2868004Drought Stress(Tissue:root)19.315
SRR2967015Control (Tissue:root)19.944

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.899
SRR9715740Leave22.603
SRR9715741Leave13.190
SRR9715739Root9.766
SRR9715742Root16.938
SRR9715743Root14.151

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h43.627
SRR8749028MeJA induced 9h37.375
SRR8749029MeJA induced 9h39.565
SRR8749030Uninduced41.824
SRR8749031Uninduced24.465
SRR8749032Uninduced15.336

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.012
SRR8400027Control-Root23.111

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved