Gene detail information of Glyur000115s00008262.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G42790.17.00E-66alfin-like 3
NRXP_006596996.11.33E-115PREDICTED: uncharacterized protein LOC100777146 isoform X1 [Glycine max]
Swissprottr|Q9M2B4|ALFL3_ARATH8.00E-98PHD finger protein ALFIN-LIKE 3, N-terminally processed
trEMBLtr|I1MD29|I1MD29_SOYBN5.00E-116Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G03160.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00115244729248768-


Gene family

Gene familysubfamily
Transcription Factors FamilyAlfin-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0042393  histone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000115s00008262.1PF12165.3DUF35946418.30E-13
Glyur000115s00008262.1PF12165.3DUF3594972002.30E-61
Glyur000115s00008262.1PF00628.24PHD2543035.20E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.956
SRR1783600control17.523
SRR1783602moderate drought stress19.377
SRR1811619moderate drought stress18.304

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.806
DRR006520Root Summer glycyrrhizin high producing strain27.076
DRR006521Root Winter glycyrrhizin high producing strain12.543
DRR006522Root Winter glycyrrhizin high producing strain12.904
DRR006523Root Summer glycyrrhizin low producing strain32.961
DRR006524Root Summer glycyrrhizin low producing strain33.366
DRR006525Leaf Summer glycyrrhizin high producing strain11.684
DRR006526Leaf Summer glycyrrhizin high producing strain12.920

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)63.667
SRR2868004Drought Stress(Tissue:root)102.507
SRR2967015Control (Tissue:root)93.810

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.383
SRR9715740Leave48.844
SRR9715741Leave60.218
SRR9715739Root16.662
SRR9715742Root26.934
SRR9715743Root25.761

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h50.233
SRR8749028MeJA induced 9h49.313
SRR8749029MeJA induced 9h45.710
SRR8749030Uninduced22.661
SRR8749031Uninduced20.542
SRR8749032Uninduced17.212

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.052
SRR8400027Control-Root36.604

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved