Gene detail information of Glyur000115s00008269.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G54420.16.00E-111homolog of carrot EP3-3 chitinase
NRACL36992.11.56E-160class IV chitinase [Medicago sativa]
COGYP_003513618.12.00E-46chitinase [Stackebrandtia nassauensis DSM 44728]
Swissprottr|P27054|CHI4_PHAVU5.00E-150Endochitinase PR4 (Precursor)
trEMBLtr|B8Y647|B8Y647_MEDSA6.00E-161Class IV chitinase {ECO:0000313|EMBL:ACL36992.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00115273476275533+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM18,GH19


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006032  chitin catabolic process

GO:0016998  cell wall macromolecule catabolic process


molecular_function

GO:0004568  chitinase activity

GO:0008061  chitin binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000115s00008269.1PF00187.14Chitin_bind_129611.30E-06
Glyur000115s00008269.1PF00182.14Glyco_hydro_19762741.70E-76


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.779
SRR1783600control7.626
SRR1783602moderate drought stress2.009
SRR1811619moderate drought stress2.080

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.334
DRR006520Root Summer glycyrrhizin high producing strain1.340
DRR006521Root Winter glycyrrhizin high producing strain0.378
DRR006522Root Winter glycyrrhizin high producing strain0.369
DRR006523Root Summer glycyrrhizin low producing strain2.793
DRR006524Root Summer glycyrrhizin low producing strain3.127
DRR006525Leaf Summer glycyrrhizin high producing strain1.146
DRR006526Leaf Summer glycyrrhizin high producing strain1.105

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)81.991
SRR2868004Drought Stress(Tissue:root)324.276
SRR2967015Control (Tissue:root)186.480

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave84.465
SRR9715740Leave27.773
SRR9715741Leave113.490
SRR9715739Root17.761
SRR9715742Root16.385
SRR9715743Root17.710

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h65.409
SRR8749028MeJA induced 9h182.711
SRR8749029MeJA induced 9h87.779
SRR8749030Uninduced152.179
SRR8749031Uninduced247.953
SRR8749032Uninduced174.853

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root145.219
SRR8400027Control-Root116.384

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved