Gene detail information of Glyur000115s00008274.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59580.2 | 0 | Plant regulator RWP-RK family protein |
| NR | XP_004486873.1 | 0 | PREDICTED: protein NLP8-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|O22864|NLP8_ARATH | 0 | Protein NLP8 |
| trEMBL | tr|K7M979|K7M979_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G03225.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00115 | 293324 | 300658 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | RWP-RK |
| EAR motif-containing Proteins | RWP-RK |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000115s00008274.1 | PF02042.10 | RWP-RK | 601 | 651 | 1.30E-25 |
| Glyur000115s00008274.1 | PF00564.19 | PB1 | 867 | 946 | 4.20E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.364 |
| SRR1783600 | control | 3.327 |
| SRR1783602 | moderate drought stress | 5.336 |
| SRR1811619 | moderate drought stress | 5.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.291 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.224 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.839 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.337 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.879 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.682 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.064 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.507 |
| SRR2967015 | Control (Tissue:root) | 11.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.729 |
| SRR9715740 | Leave | 10.869 |
| SRR9715741 | Leave | 10.668 |
| SRR9715739 | Root | 1.467 |
| SRR9715742 | Root | 9.424 |
| SRR9715743 | Root | 6.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.701 |
| SRR8749028 | MeJA induced 9h | 7.954 |
| SRR8749029 | MeJA induced 9h | 3.188 |
| SRR8749030 | Uninduced | 7.030 |
| SRR8749031 | Uninduced | 4.314 |
| SRR8749032 | Uninduced | 3.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.563 |
| SRR8400027 | Control-Root | 13.819 |