Gene detail information of Glyur000116s00009210.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14270.10phosphatidylinositol-4-phosphate 5-kinase family protein
NRKHN01471.101-phosphatidylinositol-3-phosphate 5-kinase FAB1 [Glycine soja]
COGNP_147591.21.00E-17thermosome alpha subunit [Aeropyrum pernix K1]
Swissprottr|Q9LUM0|FAB1B_ARATH01-phosphatidylinositol-3-phosphate 5-kinase FAB1B
trEMBLtr|I1KHJ0|I1KHJ0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G05100.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001166298773153+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00921PIKFYVE, FAB1 EC:2.7.1.150 Inositol phosphate metabolism map00562
Phosphatidylinositol signaling systemmap04070
Phagosomemap04145
Regulation of actin cytoskeletonmap04810


Gene Ontology

biological_process

GO:0046488  phosphatidylinositol metabolic process


molecular_function

GO:0005524  ATP binding

GO:0016307  phosphatidylinositol phosphate kinase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000116s00009210.1PF01363.16FYVE331011.40E-18
Glyur000116s00009210.1PF00118.19Cpn60_TCP14516381.60E-23
Glyur000116s00009210.1PF01504.13PIP5K151817484.60E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.889
SRR1783600control6.962
SRR1783602moderate drought stress5.851
SRR1811619moderate drought stress5.821

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.940
DRR006520Root Summer glycyrrhizin high producing strain6.805
DRR006521Root Winter glycyrrhizin high producing strain5.667
DRR006522Root Winter glycyrrhizin high producing strain5.458
DRR006523Root Summer glycyrrhizin low producing strain7.340
DRR006524Root Summer glycyrrhizin low producing strain7.401
DRR006525Leaf Summer glycyrrhizin high producing strain2.295
DRR006526Leaf Summer glycyrrhizin high producing strain2.298

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.291
SRR2868004Drought Stress(Tissue:root)13.221
SRR2967015Control (Tissue:root)13.251

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.742
SRR9715740Leave4.904
SRR9715741Leave4.355
SRR9715739Root0.865
SRR9715742Root6.850
SRR9715743Root5.601

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.006
SRR8749028MeJA induced 9h4.145
SRR8749029MeJA induced 9h1.209
SRR8749030Uninduced1.326
SRR8749031Uninduced0.572
SRR8749032Uninduced0.407

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.350
SRR8400027Control-Root12.818

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved