Gene detail information of Glyur000116s00009213.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14310.10pectin methylesterase 3
NRXP_007139063.10hypothetical protein PHAVU_009G261700g [Phaseolus vulgaris]
COGYP_004318102.19.00E-52pectinesterase [Sphingobacterium sp. 21]
Swissprottr|P83948|PME3_CITSI0Pectinesterase 3 (Precursor)
trEMBLtr|V7AZH5|V7AZH5_PHAVU0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001168036687245-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000116s00009213.1PF04043.10PMEI592233.40E-29
Glyur000116s00009213.1PF01095.14Pectinesterase2815774.80E-144


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.475
SRR1783600control4.284
SRR1783602moderate drought stress15.718
SRR1811619moderate drought stress15.977

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.487
DRR006520Root Summer glycyrrhizin high producing strain0.389
DRR006521Root Winter glycyrrhizin high producing strain0.054
DRR006522Root Winter glycyrrhizin high producing strain0.026
DRR006523Root Summer glycyrrhizin low producing strain2.833
DRR006524Root Summer glycyrrhizin low producing strain2.829
DRR006525Leaf Summer glycyrrhizin high producing strain89.267
DRR006526Leaf Summer glycyrrhizin high producing strain87.540

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.483
SRR2868004Drought Stress(Tissue:root)4.782
SRR2967015Control (Tissue:root)2.509

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave244.641
SRR9715740Leave240.211
SRR9715741Leave163.974
SRR9715739Root10.752
SRR9715742Root2.678
SRR9715743Root3.332

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.015
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.011
SRR8400027Control-Root10.560

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved