Gene detail information of Glyur000116s00009242.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G01040.10dicer-like 1
NRXP_006604922.10PREDICTED: endoribonuclease Dicer homolog 1-like isoform X1 [Glycine max]
COGYP_005004982.19.00E-21ribonuclease III [Pediococcus claussenii ATCC BAA-344]
Swissprottr|Q9SP32|DCL1_ARATH0Endoribonuclease Dicer homolog 1
trEMBLtr|K7N0F5|K7N0F5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G45060.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00116247909259499+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11592DICER1, DCR1 EC:3.1.26.- MicroRNAs in cancer map05206


Gene Ontology

biological_process

GO:0006396  RNA processing


molecular_function

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

GO:0004525  ribonuclease III activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016891  endoribonuclease activity, producing 5'-phosphomonoesters


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000116s00009242.1PF00270.24DEAD3024658.40E-14
Glyur000116s00009242.1PF00271.26Helicase_C7518186.00E-13
Glyur000116s00009242.1PF03368.9Dicer_dimer8949424.70E-08
Glyur000116s00009242.1PF02170.17PAZ122913743.70E-29
Glyur000116s00009242.1PF00636.21Ribonuclease_3140415491.30E-26
Glyur000116s00009242.1PF00636.21Ribonuclease_3162517381.50E-26
Glyur000116s00009242.1PF00035.20dsrm176518252.20E-06
Glyur000116s00009242.1PF14709.1DND1_DSRM185019212.30E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.781
SRR1783600control8.875
SRR1783602moderate drought stress16.162
SRR1811619moderate drought stress15.976

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.029
DRR006520Root Summer glycyrrhizin high producing strain10.924
DRR006521Root Winter glycyrrhizin high producing strain18.218
DRR006522Root Winter glycyrrhizin high producing strain17.780
DRR006523Root Summer glycyrrhizin low producing strain12.608
DRR006524Root Summer glycyrrhizin low producing strain12.517
DRR006525Leaf Summer glycyrrhizin high producing strain10.155
DRR006526Leaf Summer glycyrrhizin high producing strain10.088

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.620
SRR2868004Drought Stress(Tissue:root)24.029
SRR2967015Control (Tissue:root)25.613

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.122
SRR9715740Leave16.678
SRR9715741Leave16.572
SRR9715739Root2.275
SRR9715742Root18.601
SRR9715743Root15.306

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.328
SRR8749028MeJA induced 9h7.092
SRR8749029MeJA induced 9h2.605
SRR8749030Uninduced4.881
SRR8749031Uninduced1.916
SRR8749032Uninduced2.053

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.377
SRR8400027Control-Root27.177

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved