Gene detail information of Glyur000116s00009246.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G54160.16.00E-110O-methyltransferase 1
NRXP_003626617.10Caffeic acid 3-O-methyltransferase [Medicago truncatula]
COGYP_007130428.11.00E-34O-demethylpuromycin O-methyltransferase [Gloeocapsa sp. PCC 7428]
Swissprottr|Q9FQY8|COMT1_CAPAN3.00E-143Caffeic acid 3-O-methyltransferase
trEMBLtr|Q2HTB3|Q2HTB3_MEDTR0O-methyltransferase, family 2; Dimerisation {ECO:0000313|EMBL:ABD32718.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00116272655288182+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13066E2.1.1.68, COMT EC:2.1.1.68 Phenylpropanoid biosynthesis map00940


Gene Ontology

molecular_function

GO:0008168  methyltransferase activity

GO:0008171  O-methyltransferase activity

GO:0046983  protein dimerization activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000116s00009246.1PF08100.6Dimerisation501021.10E-16
Glyur000116s00009246.1PF00891.13Methyltransf_21233592.60E-90
Glyur000116s00009246.1PF00891.13Methyltransf_24525483.50E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control48.109
SRR1783600control48.384
SRR1783602moderate drought stress47.093
SRR1811619moderate drought stress46.670

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain45.341
DRR006520Root Summer glycyrrhizin high producing strain44.860
DRR006521Root Winter glycyrrhizin high producing strain8.273
DRR006522Root Winter glycyrrhizin high producing strain8.339
DRR006523Root Summer glycyrrhizin low producing strain24.410
DRR006524Root Summer glycyrrhizin low producing strain23.636
DRR006525Leaf Summer glycyrrhizin high producing strain138.964
DRR006526Leaf Summer glycyrrhizin high producing strain141.446

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.216
SRR2868004Drought Stress(Tissue:root)33.557
SRR2967015Control (Tissue:root)27.466

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave68.828
SRR9715740Leave58.036
SRR9715741Leave67.440
SRR9715739Root41.085
SRR9715742Root42.805
SRR9715743Root43.247

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.782
SRR8749028MeJA induced 9h13.829
SRR8749029MeJA induced 9h9.355
SRR8749030Uninduced7.876
SRR8749031Uninduced3.883
SRR8749032Uninduced8.271

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.267
SRR8400027Control-Root49.587

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved