Gene detail information of Glyur000116s00009258.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G01090.10pyruvate dehydrogenase E1 alpha
NRXP_004494869.10PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [Cicer arietinum]
COGYP_005071008.12.00E-173pyruvate dehydrogenase E1 alpha subunit [Arthrospira platensis NIES-39]
Swissprottr|O24457|ODPA3_ARATH0Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic (Precursor)
trEMBLtr|V7AZK2|V7AZK2_PHAVU0Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00116328608332644-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00161PDHA, pdhA EC:1.2.4.1 Carbon metabolism map01200
Glycolysis / Gluconeogenesismap00010
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922
Central carbon metabolism in cancermap05230


Gene Ontology

biological_process

GO:0006096  glycolytic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0043231  intracellular membrane-bounded organelle


molecular_function

GO:0004739  pyruvate dehydrogenase (acetyl-transferring) activity

GO:0016624  oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000116s00009258.2PF00676.15E1_dh873881.10E-97


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.847
SRR1783600control34.789
SRR1783602moderate drought stress24.464
SRR1811619moderate drought stress24.493

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.366
DRR006520Root Summer glycyrrhizin high producing strain20.196
DRR006521Root Winter glycyrrhizin high producing strain4.353
DRR006522Root Winter glycyrrhizin high producing strain4.152
DRR006523Root Summer glycyrrhizin low producing strain15.858
DRR006524Root Summer glycyrrhizin low producing strain15.834
DRR006525Leaf Summer glycyrrhizin high producing strain15.594
DRR006526Leaf Summer glycyrrhizin high producing strain15.737

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)67.752
SRR2868004Drought Stress(Tissue:root)36.927
SRR2967015Control (Tissue:root)35.759

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.024
SRR9715740Leave16.257
SRR9715741Leave13.764
SRR9715739Root26.001
SRR9715742Root19.942
SRR9715743Root22.947

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.265
SRR8749028MeJA induced 9h15.449
SRR8749029MeJA induced 9h13.284
SRR8749030Uninduced3.788
SRR8749031Uninduced1.264
SRR8749032Uninduced2.075

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root65.927
SRR8400027Control-Root70.263

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved