Gene detail information of Glyur000117s00007623.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28340.1 | 0 | receptor like protein 4 |
| NR | XP_007159352.1 | 0 | hypothetical protein PHAVU_002G230800g [Phaseolus vulgaris] |
| COG | YP_004775215.1 | 2.00E-15 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q9FN94|RLK7_ARATH | 1.00E-35 | Receptor-like protein kinase At5g59670 (Precursor) |
| trEMBL | tr|V7CQY9|V7CQY9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW31346.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00117 | 27564 | 33025 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM57 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000117s00007623.1 | PF12819.2 | Malectin_like | 29 | 363 | 2.00E-63 |
| Glyur000117s00007623.1 | PF00560.28 | LRR_1 | 444 | 463 | 0.12 |
| Glyur000117s00007623.1 | PF12799.2 | LRR_4 | 467 | 504 | 6.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.512 |
| SRR1783600 | control | 5.753 |
| SRR1783602 | moderate drought stress | 3.607 |
| SRR1811619 | moderate drought stress | 3.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.463 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.621 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.888 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.880 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.356 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.527 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.007 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.120 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.863 |
| SRR2967015 | Control (Tissue:root) | 6.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.414 |
| SRR9715740 | Leave | 0.680 |
| SRR9715741 | Leave | 1.015 |
| SRR9715739 | Root | 1.525 |
| SRR9715742 | Root | 4.560 |
| SRR9715743 | Root | 3.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.039 |
| SRR8749028 | MeJA induced 9h | 6.301 |
| SRR8749029 | MeJA induced 9h | 5.259 |
| SRR8749030 | Uninduced | 1.256 |
| SRR8749031 | Uninduced | 0.703 |
| SRR8749032 | Uninduced | 0.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.548 |
| SRR8400027 | Control-Root | 19.093 |