Gene detail information of Glyur000117s00007626.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G44280.13.00E-73RING 1A
NRXP_004505080.10PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like [Cicer arietinum]
Swissprottr|Q9FKW0|RNG1A_ARATH5.00E-88Putative E3 ubiquitin-protein ligase RING1a
trEMBLtr|A0A072UYT1|A0A072UYT1_MEDTR0E3 ubiquitin-protein ligase RING1a-like protein, putative {ECO:0000313|EMBL:KEH31015.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001173876048129-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000117s00007626.2PF00097.20zf-C3HC4671062.30E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.031
SRR1783600control10.079
SRR1783602moderate drought stress10.545
SRR1811619moderate drought stress10.974

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.031
DRR006520Root Summer glycyrrhizin high producing strain13.708
DRR006521Root Winter glycyrrhizin high producing strain13.063
DRR006522Root Winter glycyrrhizin high producing strain11.882
DRR006523Root Summer glycyrrhizin low producing strain5.472
DRR006524Root Summer glycyrrhizin low producing strain5.435
DRR006525Leaf Summer glycyrrhizin high producing strain9.582
DRR006526Leaf Summer glycyrrhizin high producing strain10.198

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.965
SRR2868004Drought Stress(Tissue:root)7.706
SRR2967015Control (Tissue:root)8.506

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.589
SRR9715740Leave4.523
SRR9715741Leave6.398
SRR9715739Root1.198
SRR9715742Root8.699
SRR9715743Root7.076

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.275
SRR8749028MeJA induced 9h27.047
SRR8749029MeJA induced 9h22.211
SRR8749030Uninduced12.015
SRR8749031Uninduced11.106
SRR8749032Uninduced8.302

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.187
SRR8400027Control-Root11.589

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved