Gene detail

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Gene detail information of Glyur000117s00007626.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G44280.1	3.00E-73	RING 1A
NR	XP_004505080.1	0	PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like [Cicer arietinum]
Swissprot	tr\|Q9FKW0\|RNG1A_ARATH	5.00E-88	Putative E3 ubiquitin-protein ligase RING1a
trEMBL	tr\|A0A072UYT1\|A0A072UYT1_MEDTR	0	E3 ubiquitin-protein ligase RING1a-like protein, putative {ECO:0000313\|EMBL:KEH31015.1}

Sequence

Transcript Sequence

>Glyur000117s00007626.3
GAGAATCAACTACTTCAACAGCTTCTCCTCTCTGTGTCTCTCAGAGTCAAGTCGTTTCGCAACCGTCGTTTCCCTTCACAGCCTCTGCTTCCGCCTCAGGCTGCGAAGCCTTTGAGGTTTATATATAATATAACCGTTAGGTTTTCGGCTGGAGTGAAACCAATGCCAGCACAGAAGCGCTCTTACGAGGCTATCAAAGAGGAAGAGGATGCTCAGATAATCAACCCGGAGCAACCTGCTGCTGAAGATGATGGAGTCGAATCTGATGGAAGCCATTCATCGAGCAATGAGGATGAGGACAAGGAGAAGGATGATGAGTTTGTGGTTATAAAATTGTCAGATATACACAAGGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGGAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTTTGCAGAGAGTGCATAGATAAATCCATGCGCCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGTCGACGCTCGCTGAGAGATGACCCAAACTTTGATGCCTTGATTGCTGCTCTCTATCCAGATATTGACAAGTATGAGGAGCAGAAGATCCAAGCATCCATTGCCCAGACTCTACATCGTCAAACAGAAGCATCGAGTAAGAAACGGAATGCCAAAGCAACTGCAATGGCTTTTTTGAGGAGGTCACAAGGCAACTATCGAACTTCACATCTNAGGAGACGAAGAAACATTAGAAACACCGGCCAGGTATCCAATGACAATGAAGATACGAATGATAATGATGGGGGAAAGGACTCATCTTCTGGCGATGAGCAGATGGAAACCAAGCCAAGTGGATGCAAAAGAGGTGAACAAGAAACACAATTTCCTCAGCATTCTGCCATCACTGATCCAGATGGAACTGGTGATGAAAATATTCAAGAAGTAAATAGAGAAATCATGAGTGCATCTGGTACACTTGCCTGGGGAAAAAATGGTCAACGGAGTAACAACCGAGTCAATGGGAAGAATGCCAGGAACAGTCGCATCTCCAGATTGGTTGATCATCTTCGTAACTCGGCATCAAATGATTATGGGCTTTCCGTCTTTCTCATGCTTGTCTCTTTGGATGAGCAAAGTATACCAAGTCTGCAGCTACCATACCTTACCTGCAACCGTACTGTGTCGGTCAAGATACTGTGCAAGTATGTTGCATTTAAAACTGATCTNCGGGAGGGTGAAGTTGAATTATCGTTGGTACTAAAGCCGCAAGCCAACATTGTAAGAGGTGAAAGGACCGTTGATCCAGACAAAGATAATATACGTGTTCTAGGAGATCAAGAAACTTTGGGTGAACTGCTGGAAACTTATGAAAGTATCAGCTGTGGTTATCTGGTCATGGCTTACAAGAGGAAGTTGCAGAATTCAGGCACAGTTGGGTCCAAGCTGAATGATGAACAGAAACCTGAATCCTTCCTTGCTGAGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	38760	48129	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007626.3	PF00097.20	zf-C3HC4	67	106	2.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.031
SRR1783600	control	10.079
SRR1783602	moderate drought stress	10.545
SRR1811619	moderate drought stress	10.974

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.031
DRR006520	Root Summer glycyrrhizin high producing strain	13.708
DRR006521	Root Winter glycyrrhizin high producing strain	13.063
DRR006522	Root Winter glycyrrhizin high producing strain	11.882
DRR006523	Root Summer glycyrrhizin low producing strain	5.472
DRR006524	Root Summer glycyrrhizin low producing strain	5.435
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.582
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.198

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.965
SRR2868004	Drought Stress(Tissue:root)	7.706
SRR2967015	Control (Tissue:root)	8.506

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.589
SRR9715740	Leave	4.523
SRR9715741	Leave	6.398
SRR9715739	Root	1.198
SRR9715742	Root	8.699
SRR9715743	Root	7.076

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.275
SRR8749028	MeJA induced 9h	27.047
SRR8749029	MeJA induced 9h	22.211
SRR8749030	Uninduced	12.015
SRR8749031	Uninduced	11.106
SRR8749032	Uninduced	8.302

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	13.187
SRR8400027	Control-Root	11.589