Gene detail information of Glyur000117s00007628.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33810.1 | 6.00E-33 | squamosa promoter binding protein-like 3 |
| NR | AFK42236.1 | 1.21E-64 | unknown [Medicago truncatula] |
| Swissprot | tr|Q38741|SBP1_ANTMA | 2.00E-45 | Squamosa promoter-binding protein 1 |
| trEMBL | tr|I3SPP4|I3SPP4_MEDTR | 5.00E-65 | Uncharacterized protein {ECO:0000313|EMBL:AFK42236.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00117 | 57813 | 60147 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000117s00007628.1 | PF03110.9 | SBP | 76 | 151 | 8.60E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.963 |
| SRR1783600 | control | 8.982 |
| SRR1783602 | moderate drought stress | 8.121 |
| SRR1811619 | moderate drought stress | 8.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.235 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.199 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.794 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.979 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.680 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.078 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.333 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.607 |
| SRR2967015 | Control (Tissue:root) | 0.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.768 |
| SRR9715740 | Leave | 16.899 |
| SRR9715741 | Leave | 15.973 |
| SRR9715739 | Root | 2.336 |
| SRR9715742 | Root | 6.552 |
| SRR9715743 | Root | 6.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.399 |
| SRR8749028 | MeJA induced 9h | 5.645 |
| SRR8749029 | MeJA induced 9h | 3.963 |
| SRR8749030 | Uninduced | 3.228 |
| SRR8749031 | Uninduced | 1.397 |
| SRR8749032 | Uninduced | 1.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.590 |
| SRR8400027 | Control-Root | 2.342 |