Gene detail information of Glyur000117s00007649.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17420.10lipoxygenase 3
NRXP_003528455.20PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic-like [Glycine max]
Swissprottr|O24371|LOX31_SOLTU0Linoleate 13S-lipoxygenase 3-1, chloroplastic (Precursor)
trEMBLtr|I1KLK0|I1KLK0_SOYBN0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00117186505189467-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000117s00007649.1PF00305.14Lipoxygenase126532.20E-197


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.000
SRR1783600control0.000
SRR1783602moderate drought stress0.019
SRR1811619moderate drought stress0.019

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.182
DRR006522Root Winter glycyrrhizin high producing strain0.216
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.138
DRR006526Leaf Summer glycyrrhizin high producing strain0.109

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.585
SRR2868004Drought Stress(Tissue:root)0.636
SRR2967015Control (Tissue:root)0.220

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.056
SRR9715740Leave0.188
SRR9715741Leave0.000
SRR9715739Root0.000
SRR9715742Root0.065
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.371
SRR8749028MeJA induced 9h0.752
SRR8749029MeJA induced 9h0.306
SRR8749030Uninduced8.369
SRR8749031Uninduced3.167
SRR8749032Uninduced12.842

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.787
SRR8400027Control-Root0.073

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved