Gene detail information of Glyur000117s00007652.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33770.1 | 0 | phosphate 2 |
| NR | XP_003542748.2 | 0 | PREDICTED: probable ubiquitin-conjugating enzyme E2 24 isoform X1 [Glycine max] |
| Swissprot | tr|Q8VY10|UBC24_ARATH | 0 | Probable ubiquitin-conjugating enzyme E2 24 |
| trEMBL | tr|I1M0A8|I1M0A8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G24810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00117 | 206846 | 212776 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10581 | UBE2O | EC:2.3.2.24 | Ubiquitin mediated proteolysis | map04120 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000117s00007652.1 | PF00179.21 | UQ_con | 682 | 828 | 1.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.990 |
| SRR1783600 | control | 9.995 |
| SRR1783602 | moderate drought stress | 9.448 |
| SRR1811619 | moderate drought stress | 9.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.516 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.428 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.826 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.729 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.742 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.509 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.596 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 168.858 |
| SRR2868004 | Drought Stress(Tissue:root) | 291.384 |
| SRR2967015 | Control (Tissue:root) | 265.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.809 |
| SRR9715740 | Leave | 26.454 |
| SRR9715741 | Leave | 16.999 |
| SRR9715739 | Root | 1.245 |
| SRR9715742 | Root | 16.432 |
| SRR9715743 | Root | 12.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.770 |
| SRR8749028 | MeJA induced 9h | 0.749 |
| SRR8749029 | MeJA induced 9h | 0.634 |
| SRR8749030 | Uninduced | 1.317 |
| SRR8749031 | Uninduced | 0.917 |
| SRR8749032 | Uninduced | 1.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.930 |
| SRR8400027 | Control-Root | 17.616 |