Gene detail information of Glyur000117s00007658.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21610.1 | 1.00E-26 | lsd one like 2 |
| NR | XP_003529323.1 | 2.44E-58 | PREDICTED: protein LOL2 [Glycine max] |
| Swissprot | tr|O65426|LOL2_ARATH | 4.00E-36 | Protein LOL2 |
| trEMBL | tr|V7CPU3|V7CPU3_PHAVU | 1.00E-54 | Uncharacterized protein {ECO:0000313|EMBL:ESW31383.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00117 | 215585 | 218289 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-LSD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000117s00007658.1 | PF06943.7 | zf-LSD1 | 42 | 65 | 2.10E-11 |
| Glyur000117s00007658.1 | PF06943.7 | zf-LSD1 | 95 | 119 | 6.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.431 |
| SRR1783600 | control | 19.964 |
| SRR1783602 | moderate drought stress | 22.021 |
| SRR1811619 | moderate drought stress | 22.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.831 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.992 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.215 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.228 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 44.191 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.985 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.864 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 55.805 |
| SRR2868004 | Drought Stress(Tissue:root) | 58.227 |
| SRR2967015 | Control (Tissue:root) | 60.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.589 |
| SRR9715740 | Leave | 35.767 |
| SRR9715741 | Leave | 29.832 |
| SRR9715739 | Root | 31.974 |
| SRR9715742 | Root | 19.665 |
| SRR9715743 | Root | 23.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.829 |
| SRR8749028 | MeJA induced 9h | 28.226 |
| SRR8749029 | MeJA induced 9h | 43.536 |
| SRR8749030 | Uninduced | 50.334 |
| SRR8749031 | Uninduced | 33.471 |
| SRR8749032 | Uninduced | 41.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 46.721 |
| SRR8400027 | Control-Root | 42.807 |