Gene detail

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Gene detail information of Glyur000117s00007660.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04910.1	0	AAA-type ATPase family protein
NR	XP_003529321.1	0	PREDICTED: vesicle-fusing ATPase-like [Glycine max]
COG	YP_002428763.1	2.00E-53	AAA family ATPase [Desulfurococcus kamchatkensis 1221n]
Swissprot	tr\|Q9M0Y8\|NSF_ARATH	0	Vesicle-fusing ATPase
trEMBL	tr\|I1KLJ1\|I1KLJ1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G31570.1}

Sequence

Transcript Sequence

>Glyur000117s00007660.2
ATGACCGTGACCAACACGCCCAATCAGGAACTCGCCCTCACCAACCTCGCCTTCTGTTCCCCCTCCGATCTTCCCAAATTCGCCGTCCCCGGTCATGAAAGCATACGCAGTGGCCATATTGCGTTGAATTCCATTCAGCGTCGGTGTGCCAAAGTTTCTGCTGCTGAATCCATAAGTGTGAGCCGATTCGTGCCGCCTGAAAACTTCAACCTGGCACTGCTAACCCTTGAATTGGACTTCATTAAAAGGGTTGGAAACAGGAGTGAACAGATTGATGCAGTTCTACTGGCCAAGCAACTTCGGAAGAGATTTTTAAACCAGGTAATGACAGCAGGGCAGAAAGTGCTATTTGAGTATCATGGAAACAATTATAGCTTTACAGTCAGTCAAGCTGCTGTTGAGGGCCAAGAAAAGTCTAATTCTCCTGAAAGAGGGATGGTTTCAGAGGACACATACATTGTTTTTGAAGCATCACGTGATAGTGGAATTAAGATTGTCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAATTTAACCTTCAGTCTCTGGGCATTGGTGGACTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCATCTCGCGTTTTCCCTTCCCATGTGACATCTAAATTAGGGATCAAGCACGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGAACTGGAAAGACCCTTATGGCACGTCAAATTGGAAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAAAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGATCAGAGGGCCCTAGGGGATGAAAGCGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGATAGATGGTGTGGAGTCACTGAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCAGGNCGGTTGGAAGTCCAGGTTGAGATAAGTCTTCCTGATGAAAGTGGTCGATTGCAAATTCTTCAAATTCATACTAACAAAATGAAAGAGAACTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACTAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAATTGAGCCTAGATGATCTCACTAAACCAGTGGAGGAAGAGAATATTAAGGTTACGATGGATGACTTTTTGAATGCACTCCATGAAGTTATTCCTGCATTTGGAGCTTCCACTGACGATCTTGAAAGATGCAGACTCCATGGCATGGTGGAATGTGGCGATCGACATAAGCACATTTATCAGAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCCCTTGTTACTTGTCTTCTGGAAGGTTCTAGTGGCAGTGGTAAAACCGCACTTGCAGCTACTGTAGGTATCGACAGTGACTTCGCATATGTCAAGATAGTTTCAGCTGAATCAATGATTGGTCTACATGAGAGCACTAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCACTGAGTGTTATTATTCTTGATGACATTGAGAGATTATTGGAGTATGTGCCCATTGGTCCTCGTTTTTCAAACTTGATTTCTCAGACACTACTGGTCCTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGTACGACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGCGATACTTTCTCTGTAACATACCATGTTCCTACCTTGAACACGAATGATACAAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTGATGAAGATATCGATTCTGCTGCAGAGGCATTGAATGATATGCCTATCAGGAAGCTGTACATGTTGATTGAGATGGCAGCGCAAGGGGCGCAAGGCGGATCCGCAGAAGCTATCTATTCTGGCAAAGACAAGATTAATATAGCCCATTTCTATGACTGCCTCCAGGATGTGATCAGATTATAATTTCTTGTCTCGTCAAGTGCTTCCACAATTGAGTGCATTGTTTTGTATCATCGATGTTCCAATCTGATTTTTTGTATATTTAAAATTCCTACTTTTCATGATACTTCAGTTTTGCGGAGGCTCTCTCTATCACTGTTGCTTGCTTGTGCGGATAGTAATTTTAAGAGGCAGGAGTTTTTTTAGTTCCTGTTTTATCTTTTAGGGCCATGGCTTAGTTTGAATTGAGCTTTACCCAAACTGGCATAACCTTCTGTCTTGGGGATTCAACATTATCCAAACTTCTTATATCGAGGTATCTTACTCCGGCTTTATTTTAATGTGAAAATCAACAATATACATGAATTTTTTTAATGGTTGCATATCGGAATATCTAATTACAAAATTCACATTTTCAGTAACAGCTGAACATTGCTCGAAACAGCTGAATAGATAAATTGTGGGATTGAGATTATCAGCAGTTGAAAAATCAACTGCAGTGATCTCGATCATAATAAAGCTGGTTTATTAAAAAGAAAAAATAAAAAAACATGAATGAAAAAATAATTAGGATCAGAGGATTAGAACTGCACCTGCAGCAGTTGGTTTTACGACTGCAGAGGATCCACTTCATAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	221932	232387	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06027	NSF, SEC18	EC:3.6.4.6	Autophagy - yeast	map04138
			Vasopressin-regulated water reabsorption	map04962
			GABAergic synapse	map04727
			Synaptic vesicle cycle	map04721

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007660.2	PF02933.12	CDC48_2	90	136	9.80E-08
Glyur000117s00007660.2	PF00004.24	AAA	225	343	1.50E-27
Glyur000117s00007660.2	PF00004.24	AAA	484	597	3.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.426
SRR1783600	control	35.851
SRR1783602	moderate drought stress	28.869
SRR1811619	moderate drought stress	28.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.755
DRR006520	Root Summer glycyrrhizin high producing strain	37.799
DRR006521	Root Winter glycyrrhizin high producing strain	61.023
DRR006522	Root Winter glycyrrhizin high producing strain	59.780
DRR006523	Root Summer glycyrrhizin low producing strain	33.361
DRR006524	Root Summer glycyrrhizin low producing strain	33.307
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.322
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.304

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	59.493
SRR2868004	Drought Stress(Tissue:root)	47.540
SRR2967015	Control (Tissue:root)	44.446

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	18.340
SRR9715740	Leave	17.476
SRR9715741	Leave	20.701
SRR9715739	Root	19.700
SRR9715742	Root	39.650
SRR9715743	Root	38.606

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.295
SRR8749028	MeJA induced 9h	34.319
SRR8749029	MeJA induced 9h	32.877
SRR8749030	Uninduced	18.143
SRR8749031	Uninduced	16.777
SRR8749032	Uninduced	14.368

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	42.802
SRR8400027	Control-Root	41.878