Gene detail information of Glyur000117s00007667.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47160.1 | 1.00E-87 | RING/U-box superfamily protein |
| NR | XP_003529317.1 | 2.48E-179 | PREDICTED: uncharacterized protein LOC100777318 [Glycine max] |
| trEMBL | tr|I1KLI6|I1KLI6_SOYBN | 9.00E-180 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G31510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00117 | 251910 | 255802 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000117s00007667.1 | PF13920.1 | zf-C3HC4_3 | 148 | 194 | 2.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.428 |
| SRR1783600 | control | 5.600 |
| SRR1783602 | moderate drought stress | 7.182 |
| SRR1811619 | moderate drought stress | 7.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.269 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.139 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.004 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.273 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.766 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.840 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.968 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.231 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.579 |
| SRR2967015 | Control (Tissue:root) | 12.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.256 |
| SRR9715740 | Leave | 6.028 |
| SRR9715741 | Leave | 6.013 |
| SRR9715739 | Root | 2.736 |
| SRR9715742 | Root | 3.307 |
| SRR9715743 | Root | 2.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.309 |
| SRR8749028 | MeJA induced 9h | 12.021 |
| SRR8749029 | MeJA induced 9h | 9.877 |
| SRR8749030 | Uninduced | 2.456 |
| SRR8749031 | Uninduced | 2.509 |
| SRR8749032 | Uninduced | 4.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.409 |
| SRR8400027 | Control-Root | 12.905 |