Gene detail information of Glyur000118s00009648.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G27940.10P-glycoprotein 13
NRXP_003544389.10PREDICTED: ABC transporter B family member 13-like [Glycine max]
COGYP_003978596.13.00E-133ABC transporter CydDC cysteine exporter family permease/ATP-binding protein CydC 1 [Achromobacter xylosoxidans A8]
Swissprottr|Q9C7F8|AB13B_ARATH0ABC transporter B family member 13
trEMBLtr|I1MC27|I1MC27_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G40280.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0011899614106984-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000118s00009648.1PF00664.18ABC_membrane432109.90E-18
Glyur000118s00009648.1PF00005.22ABC_tran3494976.00E-38
Glyur000118s00009648.1PF00664.18ABC_membrane6459106.20E-48
Glyur000118s00009648.1PF00005.22ABC_tran98011281.70E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.523
SRR1783600control0.508
SRR1783602moderate drought stress0.226
SRR1811619moderate drought stress0.233

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.635
DRR006520Root Summer glycyrrhizin high producing strain0.636
DRR006521Root Winter glycyrrhizin high producing strain0.927
DRR006522Root Winter glycyrrhizin high producing strain0.904
DRR006523Root Summer glycyrrhizin low producing strain0.078
DRR006524Root Summer glycyrrhizin low producing strain0.041
DRR006525Leaf Summer glycyrrhizin high producing strain7.474
DRR006526Leaf Summer glycyrrhizin high producing strain7.462

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.692
SRR2868004Drought Stress(Tissue:root)0.661
SRR2967015Control (Tissue:root)0.484

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.459
SRR9715740Leave2.672
SRR9715741Leave3.472
SRR9715739Root0.006
SRR9715742Root0.343
SRR9715743Root0.412

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.502
SRR8749028MeJA induced 9h3.044
SRR8749029MeJA induced 9h2.968
SRR8749030Uninduced3.293
SRR8749031Uninduced6.018
SRR8749032Uninduced3.564

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.308
SRR8400027Control-Root2.870

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved