Gene detail

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Gene detail information of Glyur000118s00009681.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G75660.1	5'-3' exoribonuclease 3
NR	XP_003549459.1	PREDICTED: 5'-3' exoribonuclease 3-like isoform X1 [Glycine max]
Swissprot	tr\|Q9FQ03\|XRN3_ARATH	5'-3' exoribonuclease 3
trEMBL	tr\|I1MY22\|I1MY22_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G37650.1}

Sequence

Transcript Sequence

>Glyur000118s00009681.1
ATGGGAGTTCCAGCGTTCTATCGATGGTTGGCGGAGAAATATCCGATGGTGATTGTGGACGCAATCGAGGAGGAACCGGTGGTAATCGAAGGCGTTTCAATCCCGCCATCTCCGACTTCATTCGATGAGGTGTTTGAGTGCATGTTCGACTACATTGACAGGCTATTTGTCATGGTGCGGCCTCGGAAGCTGCTTTTCATGGCTATTGATGGTGTTGCGCCGAGGGCTAAAATGAACCAACAACGTTCTAGGCGGTTTAGAGCAGCCAAAGATGCAGCTGATGCGGCTGCTGAAGAAGCAAGGTTAAGGGAGGAATTTGAGAAGGAGGGCAGAAAGCTTCCTCCTAANGAAGAGTCACAGACTTTCGATTCAAATGTCATTACGCCTGGAACTGAATTTATGGCTGTTTTGTCGATTGCACTTCAGTACTACGTTCATCTTAGGTTGAACAATGATCCTGGTTGGAAAAATATTAAGGTTATTCTTTCNGATGCAAATGTTCCTGGTGAAGGGGAGCACAAGATTATGTCCTATATTCGNCTGCAAAGAAATCTTAAAGGTTTTGATCCGAATACACGACATTGCCTGTATGGTTTGGATGCTGATTTGATTATGTTGGCTCTGGCTACCCATGAAATCCATTTTTCAATTCTTAGGGAGGTTGTATTTACCCCTGGACAAGACAAATGCTTCATATGTGGTCAGATGGGTCATGTTGCTGCAGACTGTGAAGGAAAGGCAAAAAGGAAAGCAGGAGAGTTTGATGAAAAAGGAAATGCTATTGTTGCCAAAAAGCCCTACCAGTTTCTTAACATTTGGACTTTGAGGGAATATCTGGAGTATGAGTTCAGAATACCTAATCCTCCTTTCGAGATTGATTTTGAATGCATTCTGGATGATTTTATCTTCATATGTTTTTTCGTTGGCAATGATTTCCTACCACATATGCCTACACTAGAGATTCGTGAGGGTGCAATTAACTTGTTGATGGCAGTATACAAGAAGGAATTTAAGGCATTGGGTGGTTATTTGACCAATGGAAGCAAGCCAAATTTGAGCAGGGTGGAGCATTTTATTCAGGCTGTTGGATCTTATGAAGATAAAATATTCCAGAAAAGAGCTCGATTGCATCAGCGACAAGTGGAAAGAATAAAGCGTCAGAAGGCACAGGCAAGAGGAGATGATGCTCAGCCTCAAATTCAACCCGAGTCTCTAGTTGCAATTTCACGATTCCATGGTTCTCGTCTTGCTTCAGCTCCAATGCCTTCACCATTTCAACAGTCTGGGCGTCATGATCGTCATATGTCCAAATCAGTTAGAAAAAACAATAAAGAAGTCTCTGAGAGGCCCCATAAAGTTGCTAGGTTATCTTCAGGAGCAACTGTTGCCGCTGCTATTGTTGAAGCTGAGGATAGTCTTGAAATAGATGTTGAAGATAACAAAGACGATTTGAAAACAAAACTGAAGGAGATACTTCGTGAGAAATCTGATGTATTCAACTCAAAAAGCACTGATGAGGACAAGATTAAGTTGGGAGTACCAGGTTGGAAAGAGAGGTATTATGAGGAAAAATTTTCTGCTNAAACTCCTGAGGAACTTGAAGCTATACGAAAAGATGTTGTTTTGAAATACACTGAAGGCCTATGTTGGGTAATGCACTATTATTANGAAGGTGTTTGTTCTTGGCAATGGTTTTATCCTTATCATTATGCCCCCTTTGCATCTGATCTCACGGGCCTTGGTGAGCTTGATATTAACTTTGAATTGGACTTTGAAGTGGACATGAATGGCAAACGCTTTTCTTGGCAGGGTATTGCAAAGTTGCCTTTTATTGATGAAGCACGTCTTCTTGCTGAAGTTCGGAAAATAGAAAACTTGTTAACACCGGAGGAAAAGCGACGGAATGCTATAATGTTCGACTTGCTTTTTGTGAATTCTTGTCATCCTCTCTCTGCATGCATTAGTACACTTGACAACAAATGTAGAAACTTGTCATACAGTGAACGTGCTGTGGTCAAGGAAAAAATCGATCCCATAGAAAGTGGTGGAATGAATGGTTACATATCCTTGTGTGGTGGAGAACCTTGCCCTCCTCTCTTCAGGTCCCCTGTTGCAGGCATGGAAGATATCATGGATAACCATACTGTGACAATTGGAGATATGAAACCTGAACCTGTTCTATGGCATGAAGAATCAGGAGGTAGGAGATATGAAGAAAATGGAAGGAAAAACCCTCCAGGATCTATTTCTGGTCGGGAGCTTGGAGATGCAGCACACAGGCTCGTTGTCAATTCCTTACAGGTCAAGGGACGCCATCGGCCGCCCTTTAATGGACCAGCCATGTCTTATGCCCCACCAGTGGGTGGGCATAGACAACCATTGCCTCCCTATGATTATGAATCACGCCCCGGCTATGTTGCAGTGCCGCCACCTTTATCTGCTCCTCCACTCCGAGGCCAACTGCCGTTCGCGCCTTACGCGGCCGTCCCTACTCCGCAGTATGGTTATGACCAACCATATTCACCACCGGTGATGCATAACCNTCACCATCAATCAAACTCCTATGGAAGAAATGACCACCAACACCCTAGATCAAATCCTTATGAAAGAACTAGCCATCATGTTCGTGGGGGAGGTGCAAGACATGGATATCCATCATCNGGAAATAATCAAAATGCCCAGTTTGTGAATAATACCCAAGGTGGTGGATTTGCCAGTCATCATCATGAAGTTGGTCGCCATAACCAAAACTTCCAACCATTTAGACCTTCTCACCAGAATTGGACACCCCGGAATAACCCAAGTGGCCACAGGGAACATGGTCAGCATTCGGTCAATCCATATTCTCACTTAGATAGAAGAGCAGATAGGAAACCAATGCCACCACATGGGTATAGTCGCAAATGAATTCATTTCTAGGGAATACTTTGACCCTACTTAATAACATTGTTGTACCATATTTTTGAGAGTTGTATTAGCAATTTCTGTTCACTATCCAAACGGCTGATAGTGGAGTTAGCTTCCTTACCAATTTTATATTGAAATAGAGGAAGTGTTAAATTATAATCCTAGAACTCAGGTTTGATAACATTTTTCAATTTGATAGGCCATTCAATTGTCATTTGTCCCTTGAGGCTCAAGTGTCGAGTGTTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00118	323523	335330	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12619	XRN2, RAT1	EC:3.1.13.-	Ribosome biogenesis in eukaryotes	map03008
K12619	XRN2, RAT1	EC:3.1.13.-	RNA degradation	map03018

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004527 exonuclease activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000118s00009681.1	PF03159.13	XRN_N	1	221	1.70E-88
Glyur000118s00009681.1	PF00098.18	zf-CCHC	229	243	1.90E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.640
SRR1783600	control	40.296
SRR1783602	moderate drought stress	47.470
SRR1811619	moderate drought stress	47.100

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.350
DRR006520	Root Summer glycyrrhizin high producing strain	39.530
DRR006521	Root Winter glycyrrhizin high producing strain	93.336
DRR006522	Root Winter glycyrrhizin high producing strain	90.751
DRR006523	Root Summer glycyrrhizin low producing strain	50.655
DRR006524	Root Summer glycyrrhizin low producing strain	50.154
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.174
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.689

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	45.637
SRR2868004	Drought Stress(Tissue:root)	50.559
SRR2967015	Control (Tissue:root)	59.061

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	24.046
SRR9715740	Leave	27.825
SRR9715741	Leave	28.637
SRR9715739	Root	5.399
SRR9715742	Root	34.784
SRR9715743	Root	27.312

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	69.933
SRR8749028	MeJA induced 9h	91.129
SRR8749029	MeJA induced 9h	85.526
SRR8749030	Uninduced	67.084
SRR8749031	Uninduced	85.289
SRR8749032	Uninduced	66.191

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	40.544
SRR8400027	Control-Root	40.418