Gene detail

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Gene detail information of Glyur000119s00012141.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01180.1	0	starch synthase 2
NR	ACL98482.1	0	starch synthase IIb precursor [Lotus japonicus]
COG	YP_003207432.1	4.00E-102	glycogen synthase [Candidatus Methylomirabilis oxyfera]
Swissprot	tr\|Q43093\|SSG2_PEA	0	Granule-bound starch synthase 2, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|B9VJS9\|B9VJS9_LOTJA	0	Starch synthase, chloroplastic/amyloplastic {ECO:0000256\|RuleBase:RU361232}

Sequence

Transcript Sequence

>Glyur000119s00012141.1
CAACTCGCTCATAAGATTTCACGTTTTAAATTCATGGACACACTGATTCCTAGTATCGCTAAACAAACTGTGTCCAGCTAAAATTCTCGCCCAAATTAAANTCTTTGGTCCCTAACAATCTTGTGTTCCAAAATCCTTGTTAGTTTTTAACCTCAAAACTCCTCCACGTTTTCCTCTTTGTGGGTACCCTTCCCATGACCCACCCAATGATTTTTCTTGCTTGTAATTCTTTTTATAAATATATTGGTTAGTTCTTCTTCCCCTTCACTACCAGTGTCAGAGTACTCCTCAATTCATCTCTGTTTCTTCACTTGGGGTACCCTTCAATTGCAAAATACCCATTTGGGTTTGTTCATCACTCAATTTAAACAATTGGGTTGTGAGCTCTTCTTGTTGTTTCTTCTCNCTGATGGCATCATCAATTGGGTCTTCACCATTTCTGTTGGAAACAAGTGCTCTGTTTGACACTAGAAGAGGAAAACGCTCTCTAAGATTCCCACTGAGAGTTTGTGGTATAAATCGTTCAAATTTTGAGCATTCAGAAGGCTTGGGATTGGGGTGTCGCAAAGGGAAGCTATGGGGGAGTAATAAGCACATAAAAGCAATAGCTAGTGAGAGTTTTGGGACAAGTGAGGACAACGATGGGTCGGAGGGTATGCTTCAGGACACCNTTGAAAAGAGCAAGAAGGTTCTTGCTCTGCAAAGAGGTTTACTTCAAGAGAGTGCTGAAAGAAAGAAACTTGCTTCTTCCATAAATAGAGACAACATTCTTGAATCAGAAGTGGACAGTTTTTCTTATGAAGGCAGAGTTAATAATGCTTTTGAAACCCAAAAAAATGGTGACATTAATGTTTTAAGAAACTTTGTCCATTCTAATCAAGACTTTGATGAAGCCAAGGAGGGAGATGTTAGAATTCCACCAACCGCAGAAATGGGTTCCTCTAGGCTATATAATTTTAATGAACAACTGAAAGAGAATAAACAATATGAGGCAATTAGGCCTGATAATGATCTACTAGCCTTCCTTGCAAATGGCACTGAAACTTCTTCTTCCAGCCTAATTAAGGGTGAAAATGATGAGGAAGGTGTGAGTGAATCAAGTTCAAAGGAGATAATTGCTGAAGATGAAGAACCTAGCAGTGGCGAGAGTGAAGGTGAAATATCCCTACCTTTAGCAGGAACCAATGTCATGAATGTTATATTGGTTGCAGCAGAATGTGCTCCCTGGTCAAAAACAGGTGGGCTTGGAGATGTTGCTGGGTCATTACCAAAGGCTTTGGCTAGGCGTGGACATAGAGTTATGGTTGTGGCTCCTCGGTATGGTAATTATGCTGAACCCCAAGATACAGGAGTGCGGAAAAGATACAAAGTAGATGGTCAGGAGGTAGAAGTGAGATATTTCCAGGCCTACATTGATGGTGTAGACTTCGTTTTTATTGAAAGTCCAATTTTTCAGCACCTACAACATAACATATATGCAGGAAGCCGATTGGATATTCTAAAACGCATGGTGCTGTTTTGCAAGGCTGCTGTAGAGGTTCCTTGGCATGTTCCATGTGGTGGTGTTTGCTATGGAGATGGAAATTTGGTCTTCATAGCAAATGATTGGCATACAGCATTGCTGCCAGTGTACCTGAAGGCATACTATCGTGACCAGGGTTTGATGAATTATACAAGATCAGTTCTTGTGATTCATAACATAGCACACCAGGGTCGGGGGCCTGTTGATGATTTCTTCTTTGTGGACTTACCTGAACACTACATAGACCTTTTCACATTATATGACCCCATTGGAGGTGACCACTTCAACATCTTTGCAGCTGGTTTAAAGGCCGCAGACCGTGTTGCCACCGTTAGCCATGGATATGCAAGGGAGCTTAAAACTTCCGAAGGTGGTTGGGGCTTGCATGGGATCATAAATGAGAGTGGATGGAAATTGAGGGGAATTGTGAATGGAATTGACGACAAAGATTGGAACCCTATCTTTGATGTTCACTTGAAATCAGATGGCTACACTAACTACTCCCTTGAGACACTGCCTAGTGGCAAGGCTCAATGTAAAGCAGCCTTGCAAAAGGAGCTTGGTTTGCCCGTCCGCGAGGATGTCCCAGTGATCGGTTTCATTGGGAGGTTGGATCAGCAGAAAGGTGTTGATCTCATAGCTGAAGCAATCCCTTGGATGATGGGTCAGGATGTGCAGCTAGTCATGTTAGGCACTGGAAGGCCTGATCTAGAACACATGCTCAGGCAATTTGAGAACCAACACCATGACAAAATCCGGGGATGGGTTGGCTTTTCTGTTAAGGTGGCTCACAGGATAACTGCAGGTGCAGACATATTGCTCATGCCATCAAGGTTTGAGCCATGTGGACTGAACCAACTCTATGCTATGAATTATGGAACAGTCCCTGTTGTGCATGCTGTTGGTGGACTGAGAGATACTGTACAGCCTTTTAATCCTTTTGATGAATCAGGCCTTGGATGGACCTTTGAAAGTGCAGATTCAGGCAAGTTGGTACACGCTTTAGGGAATTGCTTATGGACCTATAGGGAGTATAAGAAGAGCTGGGAAGGGATTCAAAGGCGAGGGATGAGTCAAGATCTTAGTTGGGACAATGCTGCTCAGCAGTATGAAGAGGTNCTTCTTGCTGCCAAATACCAATGGTGAATTCTTGGCATTTTCAATAAAGAGCTCGTTCATGTTGAAAGGAACTGTACAACTTGTTTATAGTTTACACATCAAAGCCTTCATGTAATAATATAGTTATAGTTAACCCTTTATGGTGCAAACTGCAAAGGTTATGTAATAATATAGTTAACCCTTTATGCCACGTTTAAGGATTGTGTTTAGCAGCTCAATTTTACATGTAATAATAGTATATACATGAGTTTCCAAGGTAAGGTGTTGACATACTTTCTCATGAGTCCCCCACAAGTATTTGCCCCTATTTAATCCATATCAGTATTATGCTGGAGCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00119	34319	40991	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00703	glgA	EC:2.4.1.21	Starch and sucrose metabolism	map00500
K00703	glgA	EC:2.4.1.21	Biofilm formation - Escherichia coli	map02026

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009250 glucan biosynthetic process

molecular_function GO:0009011 starch synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000119s00012141.1	PF08323.6	Glyco_transf_5	262	505	2.40E-64
Glyur000119s00012141.1	PF00534.15	Glycos_transf_1	563	704	1.10E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.911
SRR1783600	control	21.040
SRR1783602	moderate drought stress	38.863
SRR1811619	moderate drought stress	38.784

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.401
DRR006520	Root Summer glycyrrhizin high producing strain	39.718
DRR006521	Root Winter glycyrrhizin high producing strain	0.187
DRR006522	Root Winter glycyrrhizin high producing strain	0.182
DRR006523	Root Summer glycyrrhizin low producing strain	3.672
DRR006524	Root Summer glycyrrhizin low producing strain	3.559
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.369
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.367

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.820
SRR2868004	Drought Stress(Tissue:root)	13.713
SRR2967015	Control (Tissue:root)	13.800

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	497.242
SRR9715740	Leave	458.534
SRR9715741	Leave	520.628
SRR9715739	Root	16.119
SRR9715742	Root	58.293
SRR9715743	Root	50.790

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.297
SRR8749028	MeJA induced 9h	1.623
SRR8749029	MeJA induced 9h	0.513
SRR8749030	Uninduced	0.919
SRR8749031	Uninduced	0.301
SRR8749032	Uninduced	0.717

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	11.044
SRR8400027	Control-Root	3.367