Gene detail information of Glyur000119s00012147.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39660.2 | 2.00E-89 | cycling DOF factor 2 |
| NR | XP_003551736.1 | 0 | PREDICTED: cyclic dof factor 2-like [Glycine max] |
| Swissprot | tr|Q93ZL5|CDF2_ARATH | 3.00E-108 | Cyclic dof factor 2 |
| trEMBL | tr|I1N4E5|I1N4E5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G49520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 64802 | 67833 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012147.1 | PF02701.10 | zf-Dof | 138 | 198 | 2.50E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.656 |
| SRR1783600 | control | 6.707 |
| SRR1783602 | moderate drought stress | 9.245 |
| SRR1811619 | moderate drought stress | 9.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.030 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.991 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 52.839 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 50.973 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.283 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.571 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.363 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.382 |
| SRR2967015 | Control (Tissue:root) | 13.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.067 |
| SRR9715740 | Leave | 3.047 |
| SRR9715741 | Leave | 6.148 |
| SRR9715739 | Root | 5.784 |
| SRR9715742 | Root | 11.665 |
| SRR9715743 | Root | 9.470 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.870 |
| SRR8749028 | MeJA induced 9h | 37.044 |
| SRR8749029 | MeJA induced 9h | 36.592 |
| SRR8749030 | Uninduced | 13.631 |
| SRR8749031 | Uninduced | 21.807 |
| SRR8749032 | Uninduced | 32.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.362 |
| SRR8400027 | Control-Root | 20.002 |