Gene detail information of Glyur000119s00012162.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15310.1 | 8.00E-100 | myb domain protein 16 |
| NR | XP_007032600.1 | 7.47E-174 | Myb domain protein 106 [Theobroma cacao] |
| Swissprot | tr|Q8GWP0|MYB39_ARATH | 4.00E-67 | Transcription factor MYB39 |
| trEMBL | tr|A0A061EF18|A0A061EF18_THECC | 3.00E-174 | Myb domain protein 106 {ECO:0000313|EMBL:EOY03526.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 146824 | 149399 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012162.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 3.30E-15 |
| Glyur000119s00012162.1 | PF00249.26 | Myb_DNA-binding | 67 | 112 | 2.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.385 |
| SRR1783600 | control | 12.442 |
| SRR1783602 | moderate drought stress | 27.808 |
| SRR1811619 | moderate drought stress | 28.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.547 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.660 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.066 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.065 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.830 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.845 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.708 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.208 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.559 |
| SRR9715740 | Leave | 3.218 |
| SRR9715741 | Leave | 2.283 |
| SRR9715739 | Root | 5.908 |
| SRR9715742 | Root | 6.548 |
| SRR9715743 | Root | 6.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.839 |
| SRR8749028 | MeJA induced 9h | 12.979 |
| SRR8749029 | MeJA induced 9h | 20.692 |
| SRR8749030 | Uninduced | 3.497 |
| SRR8749031 | Uninduced | 3.399 |
| SRR8749032 | Uninduced | 14.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.463 |
| SRR8400027 | Control-Root | 1.612 |