Gene detail information of Glyur000119s00012163.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G01120.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NRAGA60137.10cystathionine gamma-synthase [Lens culinaris]
COGYP_003267806.16.00E-133cystathionine gamma-synthase [Haliangium ochraceum DSM 14365]
Swissprottr|P55217|CGS1_ARATH0Cystathionine gamma-synthase 1, chloroplastic {ECO:0000305} (Precursor)
trEMBLtr|L0EKR2|L0EKR2_LENCU0Cystathionine gamma-synthase {ECO:0000313|EMBL:AGA60137.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00119166186170693+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01739metB EC:2.5.1.48 Biosynthesis of amino acids map01230
Sulfur metabolismmap00920
Cysteine and methionine metabolismmap00270
Selenocompound metabolismmap00450


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0030170  pyridoxal phosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000119s00012163.1PF01053.15Cys_Met_Meta_PP1465302.40E-138


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control147.779
SRR1783600control149.303
SRR1783602moderate drought stress79.861
SRR1811619moderate drought stress79.880

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain110.919
DRR006520Root Summer glycyrrhizin high producing strain109.952
DRR006521Root Winter glycyrrhizin high producing strain151.650
DRR006522Root Winter glycyrrhizin high producing strain147.100
DRR006523Root Summer glycyrrhizin low producing strain144.135
DRR006524Root Summer glycyrrhizin low producing strain145.224
DRR006525Leaf Summer glycyrrhizin high producing strain202.937
DRR006526Leaf Summer glycyrrhizin high producing strain202.030

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)161.476
SRR2868004Drought Stress(Tissue:root)157.589
SRR2967015Control (Tissue:root)130.682

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave276.834
SRR9715740Leave264.254
SRR9715741Leave264.255
SRR9715739Root95.282
SRR9715742Root191.885
SRR9715743Root168.256

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h78.642
SRR8749028MeJA induced 9h95.322
SRR8749029MeJA induced 9h153.089
SRR8749030Uninduced154.921
SRR8749031Uninduced298.607
SRR8749032Uninduced398.537

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root113.371
SRR8400027Control-Root113.934

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved