Gene detail information of Glyur000119s00012177.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G29090.16.00E-155pectin methylesterase 31
NRAFK39733.10unknown [Lotus japonicus]
COGYP_003404589.13.00E-72pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprottr|Q9LVQ0|PME31_ARATH0Pectinesterase 31
trEMBLtr|I3SHJ1|I3SHJ1_LOTJA0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00119235220238255+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000119s00012177.1PF01095.14Pectinesterase72961.90E-71


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.054
SRR1783600control17.775
SRR1783602moderate drought stress18.078
SRR1811619moderate drought stress17.646

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.161
DRR006520Root Summer glycyrrhizin high producing strain28.334
DRR006521Root Winter glycyrrhizin high producing strain14.447
DRR006522Root Winter glycyrrhizin high producing strain14.105
DRR006523Root Summer glycyrrhizin low producing strain25.546
DRR006524Root Summer glycyrrhizin low producing strain25.983
DRR006525Leaf Summer glycyrrhizin high producing strain8.521
DRR006526Leaf Summer glycyrrhizin high producing strain8.723

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.761
SRR2868004Drought Stress(Tissue:root)16.271
SRR2967015Control (Tissue:root)16.782

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.827
SRR9715740Leave7.792
SRR9715741Leave12.835
SRR9715739Root9.840
SRR9715742Root14.114
SRR9715743Root15.111

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.093
SRR8749028MeJA induced 9h11.684
SRR8749029MeJA induced 9h16.164
SRR8749030Uninduced6.392
SRR8749031Uninduced4.197
SRR8749032Uninduced5.116

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.221
SRR8400027Control-Root20.364

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved