Gene detail information of Glyur000120s00006050.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G12500.13.00E-111basic chitinase
NRXP_004509418.10PREDICTED: endochitinase-like [Cicer arietinum]
COGYP_003125181.16.00E-50chitinase [Chitinophaga pinensis DSM 2588]
Swissprottr|P36907|CHIX_PEA0Endochitinase (Precursor)
trEMBLtr|Q7X9F6|Q7X9F6_9FABA0Class Ib chitinase {ECO:0000313|EMBL:AAP03087.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001203860840418+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM18,GH19


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K20547CHIB EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520
MAPK signaling pathway - plantmap04016


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006032  chitin catabolic process

GO:0016998  cell wall macromolecule catabolic process


molecular_function

GO:0004568  chitinase activity

GO:0008061  chitin binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000120s00006050.1PF00187.14Chitin_bind_124632.30E-18
Glyur000120s00006050.1PF00182.14Glyco_hydro_19873181.00E-124


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.255
SRR1783600control16.370
SRR1783602moderate drought stress15.868
SRR1811619moderate drought stress15.924

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.543
DRR006520Root Summer glycyrrhizin high producing strain1.438
DRR006521Root Winter glycyrrhizin high producing strain6.070
DRR006522Root Winter glycyrrhizin high producing strain5.723
DRR006523Root Summer glycyrrhizin low producing strain0.365
DRR006524Root Summer glycyrrhizin low producing strain0.370
DRR006525Leaf Summer glycyrrhizin high producing strain89.793
DRR006526Leaf Summer glycyrrhizin high producing strain89.081

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.017
SRR2868004Drought Stress(Tissue:root)45.055
SRR2967015Control (Tissue:root)34.628

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave497.703
SRR9715740Leave257.585
SRR9715741Leave345.051
SRR9715739Root89.977
SRR9715742Root99.329
SRR9715743Root93.404

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h141.876
SRR8749028MeJA induced 9h396.865
SRR8749029MeJA induced 9h216.468
SRR8749030Uninduced600.732
SRR8749031Uninduced598.987
SRR8749032Uninduced316.347

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.108
SRR8400027Control-Root103.293

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved