Gene detail information of Glyur000120s00006065.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17030.1 | 2.00E-34 | F-box family protein with a domain of unknown function (DUF295) |
| NR | XP_004509411.1 | 0 | PREDICTED: F-box protein SKIP23-like [Cicer arietinum] |
| Swissprot | tr|Q3EBZ2|SKI23_ARATH | 3.00E-40 | F-box protein SKIP23 |
| trEMBL | tr|G7LA96|G7LA96_MEDTR | 0 | F-box protein {ECO:0000313|EMBL:AET03687.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00120 | 104698 | 105798 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000120s00006065.1 | PF03478.13 | DUF295 | 287 | 333 | 4.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.594 |
| SRR1783600 | control | 13.446 |
| SRR1783602 | moderate drought stress | 14.076 |
| SRR1811619 | moderate drought stress | 13.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.358 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.145 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.773 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.490 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.495 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.859 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.920 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.356 |
| SRR2967015 | Control (Tissue:root) | 25.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.855 |
| SRR9715740 | Leave | 14.001 |
| SRR9715741 | Leave | 11.627 |
| SRR9715739 | Root | 12.617 |
| SRR9715742 | Root | 10.482 |
| SRR9715743 | Root | 12.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.868 |
| SRR8749028 | MeJA induced 9h | 3.676 |
| SRR8749029 | MeJA induced 9h | 2.435 |
| SRR8749030 | Uninduced | 10.827 |
| SRR8749031 | Uninduced | 5.207 |
| SRR8749032 | Uninduced | 1.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.735 |
| SRR8400027 | Control-Root | 16.814 |