Gene detail

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Gene detail information of Glyur000120s00006075.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66060.1	2.00E-106	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_004512179.1	1.24E-154	PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like isoform X1 [Cicer arietinum]
COG	YP_004753320.1	1.00E-47	peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331]
Swissprot	tr\|F4JZ24\|P4H10_ARATH	6.00E-143	Probable prolyl 4-hydroxylase 10 (Precursor)
trEMBL	tr\|I1LI50\|I1LI50_SOYBN	6.00E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G08560.1}

Sequence

Transcript Sequence

>Glyur000120s00006075.1
CTTTTGTTTCTTATAATAATATGGACAACCCGGAATAACATCTTACCCCTCTCCTCTCCTCTCCACTTCAATAATTCGACAAACAACTCGCATCTCTCACCTTGTAGTGTTGTTCTGTTACTCTTGCGCAGAAGCGAATTAGGTGAAGACAGTGCGCGAGAGCGCTGGGTTGAAATAGTATCGTGGGAGCCTAGAGCTTTTCTCTATCATAATTTCCTGACCAAGGAGGAATGTGAACATATAATCAATAAAGCCAAGCCAAGAATGAAAAGGTCAAAAGTTATAGATAGTGAAACAGGAAAGAGTAAAGACAGCAGAGTACGGACCAGCTCTGGAACTTTTCTGGCAAGAGGACGCGNTGAAATTGTGAGGAATATTGAGAAAAGAATTGCTGATTTTACTTTTGTACCCGCAGAGCATGGTGAAGGCCTTCAAGTTCTCCATTATGAAGCTGGACAAAAGTATACGCCTCACTTTGACTACTTTTTGGATGAATTTAACGTTAAGAATGGGGGTCAGCGTATAGCAACAATGCTGATGTACCTTTCAGATGTTGAAGAAGGGGGNGAGACGGTATTCCCACATGCCAAGGCAAATTTTAGCTCTGTGCCTTGGTGGAATGAGCTTTCTAATTGTGGAAAAAGTGGACTTTCAATTAAGCCAAAGATGGGCAATGCTTTACTTTTCTGGAGCATGAAGCCTGATACAACTCTAGATCCATTGAGTTTACATGGTAGTTGTCCAGTGATCAAGGGTGAGAAGTGGGCAGCTCCTAAATGGCTGCATATCTATGAATACAATGTATCTTACTTTATTACGCGTTCCTTCATTCTCGATCTCTCTCTGGGAGTTCCCCAAACAAACAAAGCAACAATGGTGAAGCCCAGGCACTCTCGATTGGGGACTCGGAAAGCGTCGGGAATGTCATGGACGCTGATCCTGACGTTGCTGGTGACCTTCACATTCCTCATTCTCATTCTCTTAGCTCTCGGAATCCTCTCTTTCCCCACCGCCTCCTCCGGTCTCCCCAAGCCCAACGACCTCAGCTCCATCGCTCGCAACGCTCTTTCCCGAAGCAAAGGTGAAGGCGGCGCTGGAGAGCGTTGGGTTGAAATAATATCGTGGGAGCCTAGAGCTTTTGTCTATCATAATTTCCTGACCAAGGAGGAATGTGAATATCTAATCAATATAGCCAAGCCAAGTATGCATAAGTCCACAGTTGTTGATAGTGAAACAGGAAAGAGTAAAGACAGCAGAGTAAGGACCAGTTCTGGAACTTTTCTGGCAAGAGGACGAGATCAAGTTGTGAGGGACATCGAGAAAAGAATTGCTGATTTTACTTTTGTACCCGTAGAGCATGGTGAAGGCCTTCAAGTTCTCCATTATGAAGTTGGACAAAAGTATGAGCCTCACTATGACTACTTTATGGATGATTTTAACACTAAGAATGGGGGTCAGCGTATAGCAACGGTGCTGATGTACCTCTCAGATGTTGAAGAAGGGGGTGANACGGTGTTCCCATCTGCCAAGGGAAATATCAGCTCTGTGCCTTGGTGGAATGAGCTTTCTGATTGTGGAAAAAAAGGACTTTCAATTAAGCCAAAGATGGGTGATGCTTTGCTTTTCTGGAGCATGAAGCCTGATGCAACTTTAGATCCATCAAGTTTACATGAGTTGAATTTCTTGCCAACCATTATTCTGAGCTGTGGCTTACGGCTGGAAGGAAATGCGGTTTACAGCATGTTGCGGCATTTTGTAATTCTGGATGTTCTACCATACCTCAATTCTTTGTCCTGCCCTTATCAGTTATATTAGTAATAAATATTAATATATATTTTTTTTACACATTTGTGAATTTGCATTGGGGAGGCTGAAGAAAATGTATGAAACCAATAGATGGAATGAGTATACCACTTACCACCGGATTTTCGTTCGGAGTTTAATTTGCATGTTCGTAGTAAGCATTGCAAGCCTGCTTGTGCTATAGAATTCTTTTGGTAGGCTTTGCTGCCTATAACATGCCTTTTTTTTGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00120	128665	136579	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016491 oxidoreductase activity GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000120s00006075.1	PF13640.1	2OG-FeII_Oxy_3	145	262	2.60E-11
Glyur000120s00006075.1	PF13640.1	2OG-FeII_Oxy_3	458	548	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.234
SRR1783600	control	13.569
SRR1783602	moderate drought stress	8.257
SRR1811619	moderate drought stress	8.204

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.508
DRR006520	Root Summer glycyrrhizin high producing strain	14.158
DRR006521	Root Winter glycyrrhizin high producing strain	36.136
DRR006522	Root Winter glycyrrhizin high producing strain	34.588
DRR006523	Root Summer glycyrrhizin low producing strain	12.843
DRR006524	Root Summer glycyrrhizin low producing strain	13.404
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.073
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.101

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	16.601
SRR2868004	Drought Stress(Tissue:root)	10.699
SRR2967015	Control (Tissue:root)	9.959

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.248
SRR9715740	Leave	5.072
SRR9715741	Leave	5.439
SRR9715739	Root	5.610
SRR9715742	Root	6.757
SRR9715743	Root	5.275

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.612
SRR8749028	MeJA induced 9h	100.519
SRR8749029	MeJA induced 9h	122.686
SRR8749030	Uninduced	62.718
SRR8749031	Uninduced	63.947
SRR8749032	Uninduced	70.988

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	20.086
SRR8400027	Control-Root	20.066