Gene detail information of Glyur000120s00006076.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35840.1 | 1.00E-97 | RING/U-box superfamily protein |
| NR | KHN35552.1 | 6.16E-148 | NEP1-interacting protein 2 [Glycine soja] |
| Swissprot | tr|Q8GT75|NIP1_ARATH | 8.00E-123 | NEP1-interacting protein 1 |
| trEMBL | tr|K7K6F3|K7K6F3_SOYBN | 2.00E-146 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G05001.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00120 | 140553 | 142398 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000120s00006076.1 | PF13488.1 | Gly-zipper_Omp | 48 | 81 | 5.70E-06 |
| Glyur000120s00006076.1 | PF13639.1 | zf-RING_2 | 185 | 228 | 1.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.743 |
| SRR1783600 | control | 4.612 |
| SRR1783602 | moderate drought stress | 2.986 |
| SRR1811619 | moderate drought stress | 2.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.606 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.752 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.131 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.050 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.858 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.390 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.370 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.210 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.585 |
| SRR2967015 | Control (Tissue:root) | 5.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.771 |
| SRR9715740 | Leave | 1.888 |
| SRR9715741 | Leave | 1.539 |
| SRR9715739 | Root | 2.379 |
| SRR9715742 | Root | 2.943 |
| SRR9715743 | Root | 2.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.963 |
| SRR8749028 | MeJA induced 9h | 9.093 |
| SRR8749029 | MeJA induced 9h | 15.756 |
| SRR8749030 | Uninduced | 1.940 |
| SRR8749031 | Uninduced | 3.315 |
| SRR8749032 | Uninduced | 8.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.356 |
| SRR8400027 | Control-Root | 5.124 |