Gene detail information of Glyur000120s00006077.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54380.1 | 7.00E-55 | protein kinase family protein |
| NR | XP_007156203.1 | 0 | hypothetical protein PHAVU_003G267000g [Phaseolus vulgaris] |
| COG | YP_828710.1 | 6.00E-19 | serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076] |
| Swissprot | tr|Q9LK35|THE1_ARATH | 3.00E-60 | Receptor-like protein kinase THESEUS 1 (Precursor) |
| trEMBL | tr|V7CDE2|V7CDE2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28197.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00120 | 144778 | 147315 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.8.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000120s00006077.1 | PF07714.12 | Pkinase_Tyr | 105 | 172 | 8.20E-08 |
| Glyur000120s00006077.1 | PF00069.20 | Pkinase | 182 | 346 | 1.00E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.027 |
| SRR1783600 | control | 0.027 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.082 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.080 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.083 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.082 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.969 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.726 |
| SRR2967015 | Control (Tissue:root) | 1.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.035 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.005 |
| SRR8749028 | MeJA induced 9h | 0.017 |
| SRR8749029 | MeJA induced 9h | 0.035 |
| SRR8749030 | Uninduced | 0.092 |
| SRR8749031 | Uninduced | 0.206 |
| SRR8749032 | Uninduced | 0.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.328 |
| SRR8400027 | Control-Root | 0.249 |