Gene detail

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Gene detail information of Glyur000120s00006107.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66150.1	0	Glycosyl hydrolase family 38 protein
NR	XP_003629280.1	0	Lysosomal alpha-mannosidase [Medicago truncatula]
COG	YP_003378579.1	2.00E-10	glycoside hydrolase family 38 [Kribbella flavida DSM 17836]
Swissprot	tr\|C0HJB3\|MANA_CANEN	0	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|G7LB83\|G7LB83_MEDTR	0	Alpha-mannosidase {ECO:0000256\|RuleBase:RU361199}

Sequence

Transcript Sequence

>Glyur000120s00006107.3
TGCGTATAGAATATCCACAGCGTCAGCACATTTTGGGCATTGGAAATGGGAAACACAAGGAATTTGGGTGCAGGGTCGTCTCTCTCTGCTCTTCCCCTTCTTCTCTTGCTCTGTTTCCATGGCACACTTGTTTGTGGTAAATACACAAAGTACAACACTGGGGGTGGTGTTGTGCAAGGGAAATTCAATGTTCACCTGGTTCCACACTCCCACGATGATGTTGGTTGGTTGAAGACCGTTGATCAGTACTATGTGGGCTCCAACAACAGTATTCAGACAGCGTGCGTTGAGAATGTGCTGGATTCGGTGGTCTCGTCCCTTCAGAAAGACCCAAATAGAAAGTTTGTTTTTGCGGAGATGGCGTTTTTCCATCGATGGTGGGTAGAACAGAGTCCAGAAACACAAGAACAAGTGAGAAAGCTTGTAAATGCTGGTCAGCTAGAATTCGTGAATGGGGGTTGGTGTATGCACGATGAAGCCACGTGCCACTACATAGACATGATTGACCAAACCACAATGGGGCATCTGTTTATAAAGGAGGAGTTTAACAAGACCCCTCGTGCTGGATGGCAGATTGATCCTTTTGGGCACTCTGCTGTCCAGGCTTACCTACTTGGAGCTGAGCTTGGGTTTGATTCTGTACACTTCGCTAGGATTGATTATCAGGACAGAGCTAAGCGCAAAGGTGACAAATCTCTTGAAGTTATTTGGCGTGGCTCCAAAACATTTGGTTCTTCAACTCAGATTTTTGCCAATGCTTTTCCCGTTCATTATAGTGCTCCAAAGGGTTTCAACTTTGAAGTCATGAATGACTTTGTTCCATTACAGGATGATCCTCTTATTTTTGACTACAATGTTGAACAGCGTGTCAAGGATTTTATTGATACTGCTATTACCCAAGATGGTAGAGTGAATGCCTTGTATTCTACTCCATCTATTTACACCAATGCCAAAAATGCTGCAAATATATCATGGCCACTGAAAACTGATGACTACTTCCCGTATGCTGATGGAGCAAATTCTTATTGGACAGGCTTTTTCACCAGTCGCCCAGCCTTAAAGGGATATGTTAGGATGCTAAGTGGATACTACTTGGCAGCACGTCAACTTGAATTTTTTGCTGGAAAGAAATCAACTATGTACAATACCTTTGACCTTGGAGATGCTCTAGGAATTGCACAGCACCATGATGCAGTAACTGGCACTGCCANACAACATACAACTAATGACTATGTGAAACGACTGGCTATTGGAGCCTCTAAGGCTGAAGCAGTTGTTAGTTCTTCTTTGGCATGTCTTGCTAGTAAGCAATCAGGTGATCGATGTTCTGCATCTGCATTTTCCCAGTGTCAATTACTCAATATCAGTTACTGCCCTCCAACAGAAGACAATATTCCAGAAGCTAAAAATTTGGTAGTTGTGGTGTATAACCCCCTTGGATGGAATCGCACTGATATTGTCAGAATACCAGTTAGTGATGCTAATTTTGTGGTCAAAGATTCATCAGGCAATCAACTTGAAGCACAATATGTGGAAGTGGATGATGTTACAACAAATTTAAGAAAATTATACGTGAAGGCCTATTTGGGACTGTCTCTTAAAAAGGCCCCAAAATACTGGCTTCTGTTTCAGGTGTCAATACCTCCACTTGGATGGAGTACTTACTTCATTTCTGAAGCAGCTGGAAAAAGGACAAGGAGAAAAGGAGACCTATCACACCTCAACAGTCAGAAAGGTGAGAACATTGACATCGGGCCGGGAAATTTAAAGATGTCCTTTTCTTCAACCTCTGGACAACTCAAACGGATGCATAATTCCAGGACTGGAGTTGATATACCAATTCAGCAAAGCTACCTCTGGTATGGTTCTAGTGATGGTGAGGGTGGTCAGGCTTCCGGGGCATATATATTCCGGCCTAGTGGATCCTCTCCAAATATTGTTTCAAGATCAGTGCCCTTCAAGGTAATCCGTGGACCGCTAGTTGATGAGGTTCATCAGAAGTTTAGTTCTTGGATTTACCAGGTTACCAGGCTTTACAAAGACAAAGACCATGCTGAAATCGAATTCACTATTGGTCCAATACCTACTGATGATGGAGTTGGAAAAGAGGTAATCNCACGAATGACAGCAAATATGGCCACAAACAAGGAGTTTTATACTGATTCTAATGGAAGAGATTTTCTGAAACGGGATAAGAAATCTGAATTCTCAGTCTTAGTTGATCGTGCTACTGGTGGAGCCAGCATCAAAGATGGTGAGGTGGAATTGATGCTTCATAGGCGTATTCTCCATGACGATGGTAGAGGAGTAGGGGAACCACTTGATGAACAAGTTTGCGTGAAGAACAATAGTACATGTGAAGGACTAACAATATTTGCATCTTCTGAGATATTGATTGATCAGAGCGCAGAGAAATGGAAGTCCTCTCATTTGACCAAAGGAACTGTCATGGATCCAAATTACAGCTTGCCTCCTAATGTTGCTCTGATAACTCTTGAGGAGTTGGATGGTGGAATTGTTCTTCTACGTTTGGCACATCTATATGAGCCAAGTGAAGATGTTCAGTATTCAACTCTGACCAAAGTTGAACTGAAAAAGTTGTTTGCCACAAAAACGATAAAGGAGTTGAAGGAGGTAAGTTTATCAGCTAACCAAGAGAAATCAGAAATGAAGAAGATGACATGGAAGGTTGAAGGGGACATCAAGCAAGAACCTCAAGCAGTTAGGGGGCGCCCTGTCAGCACTTCCAATTTTGTAGTTGAGCTTGGTCCCATGGAAATACGTACTTTCCTTCTGAAATTTTAATAAAAACAGCCTCAAATCC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00120	267166	276825	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH38

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01191	E3.2.1.24	EC:3.2.1.24	Other glycan degradation	map00511

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006013 mannose metabolic process

molecular_function GO:0003824 catalytic activity GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO:0004559 alpha-mannosidase activity GO:0008270 zinc ion binding GO:0015923 mannosidase activity GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000120s00006107.3	PF01074.17	Glyco_hydro_38	48	321	1.70E-71
Glyur000120s00006107.3	PF09261.6	Alpha-mann_mid	327	400	1.20E-17
Glyur000120s00006107.3	PF07748.8	Glyco_hydro_38C	457	916	1.50E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.209
SRR1783600	control	2.175
SRR1783602	moderate drought stress	2.060
SRR1811619	moderate drought stress	1.998

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.248
DRR006520	Root Summer glycyrrhizin high producing strain	1.192
DRR006521	Root Winter glycyrrhizin high producing strain	0.234
DRR006522	Root Winter glycyrrhizin high producing strain	0.314
DRR006523	Root Summer glycyrrhizin low producing strain	2.071
DRR006524	Root Summer glycyrrhizin low producing strain	1.843
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.039
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.991

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	64.434
SRR2868004	Drought Stress(Tissue:root)	53.668
SRR2967015	Control (Tissue:root)	52.396

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	20.012
SRR9715740	Leave	8.719
SRR9715741	Leave	13.822
SRR9715739	Root	0.569
SRR9715742	Root	3.953
SRR9715743	Root	2.656

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.496
SRR8749028	MeJA induced 9h	21.780
SRR8749029	MeJA induced 9h	13.063
SRR8749030	Uninduced	11.441
SRR8749031	Uninduced	7.800
SRR8749032	Uninduced	9.308

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	16.675
SRR8400027	Control-Root	11.448