Gene detail information of Glyur000121s00009711.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G03300.21.00E-158dicer-like 2
NRXP_006604892.10PREDICTED: endoribonuclease Dicer homolog 2 isoform X2 [Glycine max]
COGYP_001359556.11.00E-16ribonuclease III [Sulfurovum sp. NBC37-1]
Swissprottr|Q3EBC8|DCL2_ARATH0Endoribonuclease Dicer homolog 2
trEMBLtr|I1NCK3|I1NCK3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G44390.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00121174261178248+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11592DICER1, DCR1 EC:3.1.26.- MicroRNAs in cancer map05206


Gene Ontology

biological_process

GO:0006396  RNA processing


molecular_function

GO:0003723  RNA binding

GO:0004525  ribonuclease III activity

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000121s00009711.1PF02170.17PAZ1532742.80E-07
Glyur000121s00009711.1PF00636.21Ribonuclease_33164311.70E-21
Glyur000121s00009711.1PF14622.1Ribonucleas_3_34836003.40E-13
Glyur000121s00009711.1PF00035.20dsrm6246882.30E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.303
SRR1783600control6.026
SRR1783602moderate drought stress3.996
SRR1811619moderate drought stress4.023

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.968
DRR006520Root Summer glycyrrhizin high producing strain3.462
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain5.210
DRR006524Root Summer glycyrrhizin low producing strain5.505
DRR006525Leaf Summer glycyrrhizin high producing strain5.852
DRR006526Leaf Summer glycyrrhizin high producing strain5.599

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.893
SRR2868004Drought Stress(Tissue:root)3.654
SRR2967015Control (Tissue:root)4.381

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.948
SRR9715740Leave2.941
SRR9715741Leave3.687
SRR9715739Root0.105
SRR9715742Root7.551
SRR9715743Root5.770

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.610
SRR8749028MeJA induced 9h4.221
SRR8749029MeJA induced 9h3.476
SRR8749030Uninduced0.043
SRR8749031Uninduced0.131
SRR8749032Uninduced0.157

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.887
SRR8400027Control-Root2.168

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved