Gene detail information of Glyur000121s00009721.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46495.1 | 3.00E-67 | RING/U-box superfamily protein |
| NR | XP_003626572.1 | 1.61E-166 | RING-H2 finger protein ATL1E [Medicago truncatula] |
| Swissprot | tr|P0CH01|AT21A_ARATH | 3.00E-83 | Putative RING-H2 finger protein ATL21A (Precursor) |
| trEMBL | tr|G7L440|G7L440_MEDTR | 6.00E-167 | RING-H2 finger protein ATL21A, putative {ECO:0000313|EMBL:AES82790.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00121 | 227551 | 229264 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000121s00009721.1 | PF13639.1 | zf-RING_2 | 321 | 365 | 1.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.178 |
| SRR1783600 | control | 0.216 |
| SRR1783602 | moderate drought stress | 0.125 |
| SRR1811619 | moderate drought stress | 0.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.166 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.136 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.156 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.147 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.173 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.691 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.602 |
| SRR2967015 | Control (Tissue:root) | 21.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.010 |
| SRR9715740 | Leave | 3.194 |
| SRR9715741 | Leave | 6.022 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.584 |
| SRR8749028 | MeJA induced 9h | 1.460 |
| SRR8749029 | MeJA induced 9h | 0.431 |
| SRR8749030 | Uninduced | 2.011 |
| SRR8749031 | Uninduced | 3.283 |
| SRR8749032 | Uninduced | 0.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.990 |
| SRR8400027 | Control-Root | 3.834 |