Gene detail information of Glyur000121s00009726.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61790.11.00E-145Protein with RING/U-box and TRAF-like domains
NRCCG06551.10E3 ubiquitin ligase [Lotus japonicus]
Swissprottr|Q84JL3|SINA3_ARATH0E3 ubiquitin-protein ligase SINAT3
trEMBLtr|H8WVC3|H8WVC3_LOTJA0E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00121251509255067-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04506SIAH1 EC:2.3.2.27 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - flymap04013
Wnt signaling pathwaymap04310
p53 signaling pathwaymap04115


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0007275  multicellular organism development

GO:0016567  protein ubiquitination


cellular_component

GO:0005634  nucleus


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000121s00009726.1PF03145.11Sina902894.40E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.202
SRR1783600control17.163
SRR1783602moderate drought stress19.850
SRR1811619moderate drought stress19.649

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.760
DRR006520Root Summer glycyrrhizin high producing strain13.524
DRR006521Root Winter glycyrrhizin high producing strain26.587
DRR006522Root Winter glycyrrhizin high producing strain26.275
DRR006523Root Summer glycyrrhizin low producing strain11.516
DRR006524Root Summer glycyrrhizin low producing strain11.896
DRR006525Leaf Summer glycyrrhizin high producing strain7.493
DRR006526Leaf Summer glycyrrhizin high producing strain7.425

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.144
SRR2868004Drought Stress(Tissue:root)15.747
SRR2967015Control (Tissue:root)17.682

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.558
SRR9715740Leave8.048
SRR9715741Leave7.526
SRR9715739Root11.416
SRR9715742Root10.722
SRR9715743Root10.791

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.436
SRR8749028MeJA induced 9h14.544
SRR8749029MeJA induced 9h8.338
SRR8749030Uninduced6.133
SRR8749031Uninduced7.264
SRR8749032Uninduced6.970

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.755
SRR8400027Control-Root14.937

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved