Gene detail information of Glyur000121s00009740.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28500.1 | 1.00E-24 | LOB domain-containing protein 11 |
| NR | XP_003553793.1 | 6.70E-69 | PREDICTED: LOB domain-containing protein 1-like [Glycine max] |
| Swissprot | tr|Q9SK08|LBD11_ARATH | 6.00E-29 | LOB domain-containing protein 11 |
| trEMBL | tr|K7N0C6|K7N0C6_SOYBN | 2.00E-69 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G44645.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00121 | 324909 | 327376 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000121s00009740.1 | PF03195.9 | DUF260 | 20 | 114 | 1.50E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.062 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.055 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.960 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.550 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.111 |
| SRR2967015 | Control (Tissue:root) | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.200 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.013 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.316 |
| SRR9715743 | Root | 0.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.061 |
| SRR8749028 | MeJA induced 9h | 0.392 |
| SRR8749029 | MeJA induced 9h | 0.263 |
| SRR8749030 | Uninduced | 1.420 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.056 |
| SRR8400027 | Control-Root | 0.000 |