Gene detail information of Glyur000122s00010171.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54680.1 | 2.00E-62 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_008224874.1 | 1.45E-99 | PREDICTED: transcription factor ILR3-like [Prunus mume] |
| Swissprot | tr|Q9FH37|ILR3_ARATH | 9.00E-81 | Transcription factor ILR3 |
| trEMBL | tr|M5WIN3|M5WIN3_PRUPE | 6.00E-100 | Uncharacterized protein {ECO:0000313|EMBL:EMJ13136.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00122 | 17408 | 20476 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000122s00010171.1 | PF00010.21 | HLH | 66 | 112 | 1.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.679 |
| SRR1783600 | control | 10.674 |
| SRR1783602 | moderate drought stress | 11.933 |
| SRR1811619 | moderate drought stress | 9.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.734 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.902 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.281 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.920 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.350 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.050 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.361 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.274 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.451 |
| SRR2967015 | Control (Tissue:root) | 9.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 25.858 |
| SRR9715740 | Leave | 36.733 |
| SRR9715741 | Leave | 23.635 |
| SRR9715739 | Root | 6.670 |
| SRR9715742 | Root | 23.392 |
| SRR9715743 | Root | 21.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.538 |
| SRR8749028 | MeJA induced 9h | 5.537 |
| SRR8749029 | MeJA induced 9h | 4.969 |
| SRR8749030 | Uninduced | 2.561 |
| SRR8749031 | Uninduced | 1.189 |
| SRR8749032 | Uninduced | 3.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.864 |
| SRR8400027 | Control-Root | 15.029 |